Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF804A_chr2_184593529_184944492	0/0	c0005	3630	12	4	4	2	0	2	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0006	3630	11	1	2	4	0	4	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0007	3630	10	10	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0008	3633	10	0	4	2	1	3	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0009	3633	6	0	3	0	1	2	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0010	3630	5	0	4	0	1	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0011	3633	2	0	1	0	1	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0012	3627	2	2	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0013	3630	1	1	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0014	3630	1	0	0	0	0	1	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0015	3630	1	0	0	1	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0016	3630	1	1	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0017	3630	1	0	1	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0018	3630	1	1	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0019	3630	1	1	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0020	3630	1	1	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0021	3630	1	1	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0022	3633	1	0	0	1	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0023	3633	1	0	0	0	0	1	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804B_chr7_88754700_89343528	0/0	c0001	4050	42	12	14	11	2	3	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0002	4050	28	26	0	2	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0003	4050	17	0	2	13	0	2	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0004	4050	12	2	3	6	0	1	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0005	4050	8	0	0	6	0	2	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0006	4050	7	0	1	6	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0007	4050	7	3	1	3	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0008	4050	6	5	1	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0009	4050	5	3	1	0	0	1	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0010	4050	3	0	1	0	0	2	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0011	4050	2	2	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0012	4050	2	1	1	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0013	4050	2	2	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0014	4050	2	2	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0015	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0016	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0017	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0018	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0019	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0020	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0021	4050	1	0	0	0	0	1	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0022	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0023	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0024	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0025	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0026	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0027	4050	1	0	1	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0028	4050	1	0	0	1	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0029	4050	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0030	4050	1	0	0	1	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	c0031	4050	1	0	1	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528