Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF816_chr19_52944385_52967881	0/0	c0002	1959	87	27	8	50	0	2	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0003	1959	76	30	15	9	8	14	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0004	1959	41	1	3	34	1	2	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0005	1959	19	6	1	11	1	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0006	1956	13	0	0	13	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0007	1959	6	5	1	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0008	1875	5	5	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0009	1959	5	3	2	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0010	1959	4	0	0	4	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0011	1959	3	3	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0012	1959	3	3	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0013	1959	2	0	2	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0014	1959	2	2	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0015	1623	2	0	0	2	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0016	1959	2	2	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0017	1959	1	0	0	1	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0018	1959	1	0	0	0	0	1	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0019	1959	1	1	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0020	1956	1	0	0	0	0	1	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0021	1959	1	0	0	1	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0022	1956	1	0	0	1	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	c0023	1956	1	0	0	1	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF81_chrX_47831902_47930627	1/1	c0001	1986	189	47	33	78	6	23	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	c0002	1986	13	10	3	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	c0003	1986	12	0	0	11	0	1	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	c0004	1986	4	3	1	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	c0005	1986	4	4	0	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	c0006	1986	1	0	0	0	0	1	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	c0007	1986	1	0	0	0	0	1	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	c0008	1986	1	0	0	0	1	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	c0009	1986	1	0	1	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	c0010	1986	1	0	0	1	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF821_chr16_71854685_71889182	1/1	c0001	1239	343	53	76	156	8	48	copy fasta	ZNF821	chr16	71854685	71889182
ZNF821_chr16_71854685_71889182	0/0	c0002	1239	18	17	0	0	1	0	copy fasta	ZNF821	chr16	71854685	71889182
ZNF821_chr16_71854685_71889182	0/0	c0003	1239	13	12	1	0	0	0	copy fasta	ZNF821	chr16	71854685	71889182
ZNF821_chr16_71854685_71889182	0/0	c0004	1239	2	0	1	0	1	0	copy fasta	ZNF821	chr16	71854685	71889182
ZNF823_chr19_11716265_11743946	1/1	c0001	1833	386	81	82	164	15	42	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	c0002	1833	21	0	0	20	0	1	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	c0003	1833	3	0	2	1	0	0	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	c0004	1833	3	0	0	3	0	0	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	c0005	1833	2	2	0	0	0	0	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	c0006	1833	2	2	0	0	0	0	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	c0007	1833	2	0	0	0	1	1	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	c0008	1833	1	1	0	0	0	0	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	c0009	1833	1	1	0	0	0	0	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	c0010	1833	1	1	0	0	0	0	copy fasta	ZNF823	chr19	11716265	11743946
ZNF827_chr4_145752627_145943823	1/1	c0001	3246	243	80	42	82	13	24	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	c0002	3246	1	1	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	c0003	3246	1	1	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	c0004	3234	1	0	0	0	1	0	copy fasta	ZNF827	chr4	145752627	145943823