Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF827_chr4_145752627_145943823	0/0	c0005	3246	1	0	1	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	c0006	3246	1	0	1	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	c0007	3246	1	0	0	0	0	1	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	c0008	3246	1	1	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	c0009	3246	1	0	0	1	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	c0010	3246	1	0	0	0	0	1	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	c0011	3246	1	0	0	1	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	c0012	3246	1	1	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF829_chr19_36883124_36921291	1/1	c0001	1299	334	82	74	129	14	33	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	c0002	1299	7	0	0	7	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	c0003	1299	5	5	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	c0004	1299	2	2	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	c0005	1299	1	0	0	0	0	1	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	c0006	1299	1	0	0	1	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	c0007	1299	1	1	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	c0008	1299	1	0	0	1	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF830_chr17_34956540_34968777	0/1	c0001	1119	306	62	62	132	15	34	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	c0002	1119	76	4	5	61	2	4	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	1/0	c0003	1119	65	28	3	26	1	6	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	c0004	1107	2	2	0	0	0	0	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	c0005	1119	1	0	0	1	0	0	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	c0006	1119	1	0	1	0	0	0	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	c0007	1119	1	0	1	0	0	0	copy fasta	ZNF830	chr17	34956540	34968777
ZNF831_chr20_59158821_59264113	0/1	c0001	5034	90	8	12	46	3	20	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	1/0	c0002	5034	55	23	16	5	3	7	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0003	5034	33	0	11	20	0	2	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0004	5034	22	5	1	14	0	2	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0005	5034	17	11	3	3	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0006	5034	9	8	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0007	5034	9	0	2	0	3	4	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0008	5034	9	2	4	0	3	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0009	5034	5	4	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0010	5034	4	0	1	0	3	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0011	5034	3	0	1	1	0	1	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0012	5034	3	0	0	3	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0013	5034	3	0	0	3	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0014	5034	3	3	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0015	5034	3	0	0	3	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0016	5034	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0017	5034	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0018	5034	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0019	5034	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0020	5034	2	0	2	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0021	5034	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0022	5034	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0023	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0024	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0025	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0026	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0027	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113