Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF831_chr20_59158821_59264113	0/0	c0028	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0029	5034	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0030	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0031	5034	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0032	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0033	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0034	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0035	5034	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0036	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0037	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0038	5034	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0039	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0040	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0041	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0042	5034	1	0	0	0	1	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0043	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0044	5034	1	0	0	1	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0045	5034	1	0	0	1	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0046	5034	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0047	5034	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0048	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0049	5034	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0050	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0051	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	c0052	5034	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF835_chr19_56656980_56676757	1/0	c0001	1614	179	38	43	71	7	19	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/1	c0002	1614	138	10	26	83	6	12	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0003	1614	56	7	9	26	4	10	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0004	1614	21	13	2	5	0	1	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0005	1614	15	0	3	12	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0006	1614	8	5	3	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0007	1614	8	8	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0008	1614	4	4	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0009	1614	4	4	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0010	1614	4	2	0	1	1	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0011	1614	3	0	0	3	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0012	1614	2	2	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0013	1614	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0014	1614	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0015	1614	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0016	1636	1	0	0	1	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0017	1614	1	0	0	1	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0018	1614	1	0	0	1	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0019	1614	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	c0020	1614	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF836_chr19_52149107_52176621	0/0	c0001	2811	208	33	52	89	10	24	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	c0002	2811	142	39	15	77	2	9	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	c0003	2811	94	15	18	46	1	14	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	c0004	2811	5	5	0	0	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	c0005	2811	4	1	1	0	2	0	copy fasta	ZNF836	chr19	52149107	52176621