JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BUB1B_chr15_40156069_40226123	1/1	c0001	3153	119	11	24	69	2	11	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0002	3153	73	1	15	39	5	13	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0003	3153	67	12	7	38	2	8	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0004	3153	33	20	6	0	3	4	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0005	3153	27	26	1	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0006	3153	9	8	1	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0007	3153	9	7	2	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0008	3153	2	0	0	2	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0009	3153	2	0	0	2	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0010	3153	1	1	0	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0011	3153	1	1	0	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0012	3153	1	1	0	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0013	3153	1	0	0	0	0	1	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0014	3153	1	0	0	1	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0015	3153	1	0	0	0	0	1	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0016	3153	1	0	0	1	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0017	3153	1	1	0	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0018	3153	1	1	0	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0019	3153	1	1	0	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	c0020	3153	1	1	0	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1_chr2_110632528_110683063	1/1	c0001	3258	173	61	39	52	2	17	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	c0002	3258	4	4	0	0	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	c0003	3258	1	0	1	0	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	c0004	3258	1	1	0	0	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	c0005	3258	1	0	0	0	0	1	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	c0006	3258	1	0	0	1	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	c0007	3258	1	0	0	1	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB3_chr10_123149402_123175467	1/1	c0001	987	413	92	66	197	16	40	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	c0002	987	3	0	0	3	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	c0003	987	1	0	1	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	c0004	987	1	0	1	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUD13_chr11_116743173_116777987	1/1	c0001	1860	197	22	28	122	4	19	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0002	1860	160	39	29	70	3	19	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0003	1860	27	0	11	9	3	4	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0004	1860	20	8	11	0	1	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0005	1860	7	6	1	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0006	1860	6	6	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0007	1860	4	0	0	4	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0008	1860	4	4	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0009	1860	3	3	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0010	1860	2	2	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0011	1860	1	1	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0012	1860	1	0	0	1	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0013	1860	1	0	0	1	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0014	1860	1	1	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0015	1860	1	1	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0016	1860	1	1	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0017	1874	1	0	0	1	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0018	1860	1	0	1	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	c0019	1860	1	0	1	0	0	0	copy fasta	BUD13	chr11	116743173	116777987