Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF836_chr19_52149107_52176621	0/0	c0006	2811	3	3	0	0	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	c0007	2811	3	2	0	1	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	c0008	2811	2	0	0	0	2	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	c0009	2811	2	0	1	0	1	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	c0010	2811	2	1	1	0	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	c0011	2811	1	1	0	0	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	c0012	2811	1	0	0	1	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	c0013	2811	1	0	0	0	0	1	copy fasta	ZNF836	chr19	52149107	52176621
ZNF837_chr19_58362623_58386030	0/1	c0001	1596	249	53	56	92	12	35	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0002	1596	76	1	11	59	3	2	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	1/0	c0003	1596	51	14	11	18	3	4	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0004	1596	7	7	0	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0005	1596	4	0	0	4	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0006	1596	4	3	1	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0007	1596	3	3	0	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0008	1596	3	2	1	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0009	1596	3	0	0	3	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0010	1596	1	1	0	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0011	1596	1	0	1	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0012	1596	1	0	0	1	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0013	1596	1	1	0	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0014	1596	1	0	0	1	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0015	1596	1	0	0	0	0	1	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0016	1596	1	1	0	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0017	1596	1	0	1	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0018	1596	1	0	0	1	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0019	1596	1	1	0	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0020	1596	1	1	0	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	c0021	1596	1	0	0	1	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF839_chr14_102314746_102347367	1/1	c0001	2784	102	8	28	37	8	19	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0002	2784	98	7	18	62	3	8	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0003	2784	87	10	19	51	0	7	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0004	2784	42	24	9	0	3	6	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0005	2784	17	16	1	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0006	2784	14	0	0	12	0	2	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0007	2784	9	7	0	0	2	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0008	2784	6	0	2	3	0	1	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0009	2784	2	0	0	0	2	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0010	2784	2	2	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0011	2784	2	2	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0012	2784	2	1	1	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0013	2784	2	2	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0014	2784	2	0	1	0	0	1	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0015	2784	2	2	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0016	2784	1	0	0	1	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0017	2763	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0018	2784	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0019	2784	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0020	2784	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0021	2784	1	0	0	1	0	0	copy fasta	ZNF839	chr14	102314746	102347367