Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF839_chr14_102314746_102347367	0/0	c0022	2784	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0023	2784	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0024	2784	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0025	2784	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0026	2784	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0027	2784	1	0	0	1	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0028	2784	1	0	0	0	0	1	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0029	2784	1	0	0	0	0	1	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0030	2784	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0031	2784	1	0	0	1	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0032	2784	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0033	2784	1	0	1	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0034	2784	1	0	0	1	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0035	2784	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	c0036	2784	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF83_chr19_52607377_52643355	0/0	c0001	1467	135	21	20	85	3	6	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	1/1	c0002	1551	119	9	32	47	5	24	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0003	1551	118	38	20	40	5	15	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0004	1551	38	14	3	17	2	2	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0005	1467	8	7	1	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0006	1551	7	0	0	7	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0007	1467	7	0	0	7	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0008	1467	4	0	4	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0009	1551	3	3	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0010	1467	2	0	0	2	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0011	1551	2	2	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0012	1551	2	0	0	0	0	2	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0013	1470	2	0	2	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0014	1551	2	2	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0015	1551	1	0	0	0	0	1	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0016	1551	1	0	0	1	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0017	1551	1	0	0	1	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0018	1551	1	1	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0019	1551	1	0	0	1	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0020	1467	1	1	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0021	1551	1	0	0	0	1	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0022	1551	1	1	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0023	1551	1	1	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0024	1467	1	0	0	1	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	c0025	1551	1	0	0	1	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF841_chr19_52059465_52100765	1/1	c0001	2775	230	28	39	115	15	31	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	c0002	2775	65	18	12	23	1	11	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	c0003	2775	20	16	4	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	c0004	2775	16	0	0	16	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	c0005	2775	15	10	4	1	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	c0006	2775	7	7	0	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	c0007	2775	5	4	1	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	c0008	2775	4	4	0	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	c0009	2775	2	2	0	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	c0010	2775	1	0	0	1	0	0	copy fasta	ZNF841	chr19	52059465	52100765