Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF841_chr19_52059465_52100765	0/0	c0011	2775	1	1	0	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	c0012	2775	1	0	0	1	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	c0013	2775	1	0	0	1	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF843_chr16_31430434_31447789	1/1	c0001	1047	371	60	69	186	16	38	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	c0002	1047	24	23	1	0	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	c0003	1047	7	7	0	0	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	c0004	1047	3	0	0	0	0	3	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	c0005	1047	2	2	0	0	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	c0006	1047	2	0	0	2	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	c0007	1047	1	1	0	0	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	c0008	1047	1	0	0	0	0	1	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	c0009	1047	1	0	0	1	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	c0010	1047	1	0	0	1	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	c0011	1047	1	1	0	0	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF844_chr19_12059731_12086565	1/1	c0001	2001	189	21	53	71	11	31	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0002	2001	55	24	6	18	0	7	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0003	2001	44	32	3	8	0	1	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0004	2001	18	0	0	18	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0005	2001	13	13	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0006	2001	12	0	0	12	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0007	2001	10	0	8	0	2	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0008	1996	5	0	3	0	0	2	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0009	1999	3	3	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0010	2001	2	2	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0011	2001	1	0	0	1	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0012	2001	1	1	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0013	1999	1	1	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0014	2001	1	0	0	0	1	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0015	2001	1	0	0	1	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0016	2001	1	1	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0017	2001	1	0	0	1	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0018	2001	1	0	0	0	0	1	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0019	2001	1	0	1	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0020	2001	1	1	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	c0021	2001	1	1	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF845_chr19_53328749_53361906	0/0	c0001	2913	184	21	25	118	6	14	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	1/0	c0002	2913	69	15	13	35	1	4	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/1	c0003	2913	65	4	27	14	4	15	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0004	2913	62	11	5	40	2	4	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0005	2913	28	3	10	10	0	5	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0006	2913	14	14	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0007	2913	11	0	6	0	2	3	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0008	2913	8	7	1	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0009	2913	5	5	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0010	2913	5	5	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0011	2913	5	0	0	5	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0012	2913	3	0	1	0	1	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0013	2913	2	2	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0014	2913	1	0	0	0	0	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0015	2913	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906