Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF845_chr19_53328749_53361906	0/0	c0016	2913	1	0	0	0	0	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0017	2913	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0018	2913	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0019	142	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0020	2913	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0021	2913	1	0	0	0	0	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0022	2913	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0023	2913	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0024	2913	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0025	2913	1	0	0	0	0	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0026	2913	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0027	2913	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	c0028	2913	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF846_chr19_9750357_9773738	1/1	c0001	1602	248	36	45	116	13	36	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0002	1602	86	35	28	12	3	8	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0003	1602	9	8	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0004	229	7	6	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0005	1602	5	5	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0006	1602	3	3	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0007	1602	2	0	0	2	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0008	1602	2	2	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0009	1602	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0010	1602	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0011	1602	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0012	1602	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0013	1602	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0014	1602	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0015	1602	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0016	1602	1	0	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0017	1602	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	c0018	1602	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF84_chr12_133032509_133068299	0/1	c0001	2217	244	40	54	96	17	36	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	1/0	c0002	2217	19	16	2	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	c0003	2217	12	12	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	c0004	2217	9	7	2	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	c0005	2217	7	4	3	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	c0006	2217	7	7	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	c0007	2217	7	0	1	2	1	3	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	c0008	2217	6	0	6	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	c0009	2217	2	2	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	c0010	2217	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	c0011	2217	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	c0012	2217	1	0	0	0	0	1	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	c0013	2217	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	c0014	2217	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF850_chr19_36738480_36777807	0/1	c0001	3273	140	55	35	28	4	17	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	1/0	c0002	3273	140	8	19	94	5	13	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	c0003	3273	80	16	14	33	5	12	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	c0004	3273	24	4	3	16	0	1	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	c0005	3273	4	1	3	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807