Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF850_chr19_36738480_36777807	0/0	c0006	3273	2	2	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	c0007	3273	2	0	0	0	0	2	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	c0008	3273	1	0	0	1	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	c0009	3273	1	0	0	1	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	c0010	3273	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	c0011	3273	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	c0012	3273	1	0	0	1	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	c0013	3273	1	0	0	0	0	1	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	c0014	3273	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	c0015	3273	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF853_chr7_6610610_6629290	0/0	c0001	1980	117	6	7	79	5	20	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/1	c0002	1980	115	32	30	41	4	7	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	1/0	c0003	1980	104	6	30	51	9	7	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0004	1980	30	14	7	4	0	5	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0005	1980	14	13	1	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0006	1980	10	10	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0007	1980	6	6	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0008	1980	4	0	0	4	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0009	1980	4	0	4	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0010	1980	2	0	0	0	0	2	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0011	1980	2	2	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0012	1980	2	2	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0013	1980	1	0	0	1	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0014	1980	1	0	1	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0015	1980	1	0	0	0	0	1	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0016	1980	1	0	0	0	0	1	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0017	1980	1	0	0	0	0	1	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0018	1980	1	1	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0019	1980	1	1	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0020	1980	1	1	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0021	1980	1	0	0	1	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0022	1980	1	0	0	1	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0023	1980	1	0	0	1	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	c0024	1980	1	0	0	1	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF85_chr19_20918251_20955697	0/1	c0001	1788	316	61	52	161	9	32	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0002	1788	19	5	3	2	2	7	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0003	1788	9	0	3	0	1	5	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0004	1788	7	3	0	4	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0005	1788	4	4	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0006	1788	4	4	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0007	1788	3	0	3	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0008	1788	3	1	2	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0009	1788	3	3	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0010	1788	2	2	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0011	1788	2	2	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0012	1788	2	0	2	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0013	1788	1	0	0	1	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0014	1788	1	0	0	0	1	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0015	1788	1	0	0	1	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0016	1788	1	0	1	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697