Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF85_chr19_20918251_20955697	0/0	c0017	1788	1	0	0	1	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0018	1788	1	0	0	0	1	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0019	1788	1	1	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0020	1788	1	1	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	c0021	1788	1	1	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF860_chr3_31976750_31996723	1/1	c0001	1899	123	11	37	45	8	20	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0002	1899	83	36	9	36	0	2	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0003	1899	80	13	7	54	0	6	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0004	1815	55	0	13	25	6	11	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0005	1899	21	18	3	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0006	1815	19	0	0	18	0	1	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0007	1815	10	0	0	10	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0008	1899	7	7	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0009	1899	3	1	2	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0010	1899	2	0	0	2	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0011	1983	2	2	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0012	1899	2	2	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0013	1899	1	0	0	1	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0014	1899	1	0	0	1	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0015	1899	1	0	0	1	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0016	1815	1	0	0	1	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0017	1899	1	1	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0018	1815	1	0	1	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	c0019	1983	1	1	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF862_chr7_149833375_149872479	0/1	c0001	3510	124	20	21	58	9	15	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	1/0	c0002	3510	97	5	28	51	3	9	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0003	3510	49	4	8	30	3	4	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0004	3510	33	19	2	11	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0005	3510	21	6	8	7	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0006	3510	12	0	1	11	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0007	3510	9	7	2	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0008	3510	8	8	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0009	3510	7	7	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0010	3510	5	0	0	0	1	4	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0011	3510	5	5	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0012	3510	5	5	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0013	3510	5	0	0	5	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0014	3510	4	4	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0015	3510	3	0	1	1	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0016	3510	3	3	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0017	3510	2	0	2	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0018	3510	2	0	2	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0019	3510	2	0	0	2	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0020	3510	1	1	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0021	3510	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0022	3510	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0023	3510	1	1	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0024	3510	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0025	3510	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0026	3510	1	0	1	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479