Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF862_chr7_149833375_149872479	0/0	c0027	3510	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0028	3510	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0029	3510	1	1	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0030	3510	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0031	3510	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0032	3510	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0033	3510	1	1	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0034	3510	1	1	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	c0035	3510	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF865_chr19_55600647_55622269	1/0	c0001	3180	257	57	48	110	14	27	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0002	3180	76	13	20	31	1	11	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/1	c0003	3180	29	0	10	13	1	4	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0004	3180	12	12	0	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0005	3181	10	0	3	5	0	2	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0006	3180	7	7	0	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0007	3181	4	1	0	2	0	1	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0008	3181	4	1	1	2	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0009	3181	4	0	2	1	0	1	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0010	3181	3	0	0	3	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0011	3181	3	0	1	1	0	1	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0012	3180	3	2	1	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0013	3181	1	0	0	1	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0014	3181	1	1	0	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0015	3180	1	0	0	0	0	1	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0016	3182	1	0	0	1	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0017	3181	1	1	0	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0018	3181	1	0	0	1	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0019	3180	1	1	0	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0020	3180	1	0	0	1	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0021	3180	1	0	0	1	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0022	3180	1	1	0	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0023	3205	1	0	1	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0024	3180	1	0	1	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0025	3180	1	0	0	1	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0026	3180	1	0	0	1	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0027	3180	1	1	0	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0028	3180	1	1	0	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0029	3180	1	0	0	1	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	c0030	3180	1	1	0	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF875_chr19_37329649_37369447	1/1	c0001	1923	123	9	29	63	10	10	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0002	1923	104	31	11	51	1	10	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0003	1923	67	13	15	26	4	9	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0004	1923	46	21	8	17	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0005	1923	11	0	6	4	0	1	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0006	1923	8	8	0	0	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0007	1923	5	0	0	5	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0008	1923	4	2	2	0	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0009	1923	3	0	0	1	1	1	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0010	1923	2	2	0	0	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0011	1923	2	2	0	0	0	0	copy fasta	ZNF875	chr19	37329649	37369447