Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF892_chr2_95202521_95228839	0/0	c0003	1569	2	2	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	c0004	1569	1	0	0	0	0	1	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	c0005	1569	1	1	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	c0006	1569	1	0	0	0	0	1	copy fasta	ZNF892	chr2	95202521	95228839
ZNF8_chr19_58273955_58307791	1/1	c0001	1728	220	43	46	90	10	29	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0002	1728	155	35	25	74	7	14	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0003	1728	19	0	4	15	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0004	1728	8	4	1	0	1	2	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0005	1728	7	7	0	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0006	1728	5	3	1	1	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0007	1728	3	3	0	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0008	1728	2	0	0	2	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0009	1728	2	0	0	2	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0010	1728	1	1	0	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0011	1728	1	0	0	1	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0012	1728	1	0	0	1	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0013	1728	1	1	0	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0014	1728	1	0	0	1	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0015	1728	1	0	1	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0016	1728	1	0	0	0	0	1	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0017	1728	1	0	0	1	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	c0018	1728	1	1	0	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF90_chr19_20073000_20126165	1/1	c0001	1806	141	37	37	23	13	29	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0002	1806	132	11	14	100	0	7	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0003	1806	71	0	13	54	1	3	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0004	1806	37	34	3	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0005	1806	6	6	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0006	1806	2	2	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0007	1806	2	1	1	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0008	1806	1	1	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0009	1806	1	1	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0010	1806	1	1	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0011	1806	1	0	0	1	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0012	1806	1	0	0	0	0	1	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0013	1806	1	0	0	1	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0014	1806	1	1	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0015	1890	1	0	0	1	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0016	1890	1	0	0	1	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0017	1806	1	1	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	c0018	1806	1	0	0	1	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF91_chr19_23352696_23400471	0/1	c0001	3576	93	18	24	27	8	15	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	1/0	c0002	3576	79	2	11	60	2	3	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0003	3576	49	14	14	9	6	6	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0004	3576	40	3	0	35	0	2	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0005	3576	35	11	4	16	0	4	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0006	3576	26	24	2	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0007	3576	11	7	1	3	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0008	3576	7	6	1	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0009	3576	6	3	3	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0010	3576	2	0	0	2	0	0	copy fasta	ZNF91	chr19	23352696	23400471