JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BUD13_chr11_116743173_116777987	0/0	c0020	1860	1	0	0	0	1	0	copy fasta	BUD13	chr11	116743173	116777987
BUD23_chr7_73678597_73703212	1/1	c0001	846	370	90	69	153	16	40	copy fasta	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	c0002	846	2	2	0	0	0	0	copy fasta	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	c0003	846	1	0	1	0	0	0	copy fasta	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	c0004	846	1	0	0	1	0	0	copy fasta	BUD23	chr7	73678597	73703212
BUD31_chr7_99403969_99424616	1/1	c0001	435	357	92	46	163	16	38	copy fasta	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	c0002	435	1	1	0	0	0	0	copy fasta	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	c0003	435	1	0	0	1	0	0	copy fasta	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	c0004	435	1	1	0	0	0	0	copy fasta	BUD31	chr7	99403969	99424616
BVES_chr6_105091822_105142157	1/1	c0001	1083	217	80	35	65	8	27	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	c0002	1083	4	3	0	0	0	1	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	c0003	1083	4	0	0	4	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	c0004	1083	3	3	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	c0005	1083	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	c0006	1083	1	0	1	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	c0007	1083	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	c0008	1083	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BYSL_chr6_41916499_41938046	1/1	c0001	1314	366	83	75	154	14	38	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0002	1314	43	0	1	34	1	7	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0003	1314	37	6	2	25	0	4	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0004	1314	4	3	1	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0005	1314	3	3	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0006	1314	1	1	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0007	1314	1	1	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0008	1314	1	0	0	1	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0009	1314	1	0	0	0	1	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0010	1314	1	0	0	1	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0011	1314	1	1	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0012	1314	1	1	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0013	1314	1	1	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0014	1314	1	0	0	1	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0015	1314	1	0	1	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	c0016	1314	1	0	0	0	0	1	copy fasta	BYSL	chr6	41916499	41938046
BZW1_chr2_200806910_200832338	1/1	c0001	1260	385	85	70	164	16	48	copy fasta	BZW1	chr2	200806910	200832338
BZW1_chr2_200806910_200832338	0/0	c0002	1260	1	0	0	1	0	0	copy fasta	BZW1	chr2	200806910	200832338
BZW1_chr2_200806910_200832338	0/0	c0003	1260	1	1	0	0	0	0	copy fasta	BZW1	chr2	200806910	200832338
BZW1_chr2_200806910_200832338	0/0	c0004	1260	1	0	0	1	0	0	copy fasta	BZW1	chr2	200806910	200832338
BZW2_chr7_16641181_16711517	1/1	c0001	1260	407	91	72	179	18	45	copy fasta	BZW2	chr7	16641181	16711517
BZW2_chr7_16641181_16711517	0/0	c0002	1260	4	4	0	0	0	0	copy fasta	BZW2	chr7	16641181	16711517
BZW2_chr7_16641181_16711517	0/0	c0003	1260	3	3	0	0	0	0	copy fasta	BZW2	chr7	16641181	16711517
BZW2_chr7_16641181_16711517	0/0	c0004	1260	1	1	0	0	0	0	copy fasta	BZW2	chr7	16641181	16711517
BZW2_chr7_16641181_16711517	0/0	c0005	1260	1	0	0	0	0	1	copy fasta	BZW2	chr7	16641181	16711517
BZW2_chr7_16641181_16711517	0/0	c0006	1260	1	0	0	1	0	0	copy fasta	BZW2	chr7	16641181	16711517
BZW2_chr7_16641181_16711517	0/0	c0007	1260	1	1	0	0	0	0	copy fasta	BZW2	chr7	16641181	16711517
C10orf105_chr10_71706701_71724778	1/1	c0001	402	415	85	80	192	14	42	copy fasta	C10orf105	chr10	71706701	71724778
C10orf105_chr10_71706701_71724778	0/0	c0002	402	8	6	2	0	0	0	copy fasta	C10orf105	chr10	71706701	71724778
C10orf105_chr10_71706701_71724778	0/0	c0003	402	7	6	1	0	0	0	copy fasta	C10orf105	chr10	71706701	71724778
C10orf105_chr10_71706701_71724778	0/0	c0004	402	1	1	0	0	0	0	copy fasta	C10orf105	chr10	71706701	71724778
C10orf105_chr10_71706701_71724778	0/0	c0005	402	1	0	1	0	0	0	copy fasta	C10orf105	chr10	71706701	71724778
C10orf120_chr10_122692709_122704846	0/0	c0001	1008	160	24	33	78	2	23	copy fasta	C10orf120	chr10	122692709	122704846