Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF91_chr19_23352696_23400471	0/0	c0011	3576	2	2	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0012	3576	2	0	2	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0013	3576	2	0	0	0	0	2	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0014	3576	1	0	1	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0015	3576	1	1	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0016	3576	1	0	1	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0017	3576	1	0	0	0	0	1	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0018	3576	1	0	0	1	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0019	3576	1	0	0	0	0	1	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0020	3576	1	0	0	1	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0021	3576	1	1	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0022	3576	1	0	0	1	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0023	3576	1	1	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0024	3576	1	1	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	c0025	3576	1	0	0	1	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF92_chr7_65368855_65406136	1/1	c0001	1761	259	26	45	142	11	33	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	c0002	1761	136	53	24	52	1	6	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	c0003	1761	7	6	1	0	0	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	c0004	1761	4	4	0	0	0	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	c0005	1761	2	0	2	0	0	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	c0006	1761	1	0	0	0	0	1	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	c0007	1761	1	1	0	0	0	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF93_chr19_19895946_19940575	1/1	c0001	1863	206	47	43	78	8	28	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0002	1863	78	3	6	65	1	3	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0003	1863	47	19	2	20	1	5	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0004	1611	22	0	6	16	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0005	1862	8	6	2	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0006	1863	6	4	2	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0007	1863	3	0	0	0	0	3	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0008	1863	3	3	0	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0009	1863	2	0	2	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0010	1863	2	0	2	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0011	1863	2	2	0	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0012	1863	1	0	0	1	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0013	1359	1	0	0	1	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0014	1863	1	0	0	1	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0015	1863	1	1	0	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0016	1611	1	0	0	1	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0017	1863	1	0	0	0	0	1	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0018	1863	1	1	0	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0019	1863	1	0	0	1	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	c0020	1863	1	0	1	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF98_chr19_22386019_22427346	0/0	c0001	1719	200	29	39	97	8	27	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/1	c0002	1719	119	15	24	63	7	9	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0003	1719	21	19	2	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0004	1719	11	10	1	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0005	1719	5	5	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0006	1719	4	4	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0007	1719	3	0	2	0	1	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0008	1719	2	2	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346