Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF98_chr19_22386019_22427346	0/0	c0009	1719	2	2	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0010	1719	1	1	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0011	1719	1	0	0	1	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0012	1719	1	1	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0013	1719	1	0	0	1	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	1/0	c0014	1719	1	0	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0015	1719	1	1	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0016	1719	1	0	0	1	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0017	1719	1	1	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0018	1719	1	0	0	1	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0019	1719	1	1	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	c0020	1719	1	1	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF99_chr19_22747183_22789151	1/1	c0001	2595	158	33	28	75	6	14	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0002	2595	53	8	11	30	2	2	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0003	2595	51	24	3	24	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0004	2596	45	4	7	27	2	5	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0005	2143	6	6	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0006	2848	3	3	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0007	2596	2	0	2	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0008	2595	2	2	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0009	2595	2	0	2	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0010	3603	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0011	2595	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0012	2595	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0013	2595	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0014	2595	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0015	2595	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0016	2595	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0017	2595	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0018	2595	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0019	2595	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0020	2595	1	0	0	0	0	1	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0021	2595	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0022	2890	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0023	2595	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0024	2595	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0025	2595	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0026	2595	1	0	0	0	0	1	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0027	2595	1	0	1	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0028	2595	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0029	2210	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0030	2595	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	c0031	2595	1	0	0	0	0	1	copy fasta	ZNF99	chr19	22747183	22789151
ZNFX1_chr20_49240900_49283057	0/0	c0001	5757	141	23	31	60	7	20	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	1/0	c0002	5757	71	4	13	44	0	9	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/1	c0003	5757	55	17	10	17	4	6	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0004	5757	37	12	5	15	1	4	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0005	5757	36	0	3	30	0	3	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0006	5757	25	23	2	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0007	5757	8	0	3	0	0	5	copy fasta	ZNFX1	chr20	49240900	49283057