Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNHIT6_chr1_85644417_85713433	0/0	c0003	1413	2	0	0	2	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	c0004	1413	1	0	0	0	0	1	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	c0005	1413	1	0	0	1	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNRD2_chr11_65565477_65576888	1/1	c0001	600	318	84	58	131	16	27	copy fasta	ZNRD2	chr11	65565477	65576888
ZNRD2_chr11_65565477_65576888	0/0	c0002	600	34	1	4	18	0	11	copy fasta	ZNRD2	chr11	65565477	65576888
ZNRD2_chr11_65565477_65576888	0/0	c0003	600	4	4	0	0	0	0	copy fasta	ZNRD2	chr11	65565477	65576888
ZNRD2_chr11_65565477_65576888	0/0	c0004	600	3	3	0	0	0	0	copy fasta	ZNRD2	chr11	65565477	65576888
ZNRD2_chr11_65565477_65576888	0/0	c0005	600	1	0	0	1	0	0	copy fasta	ZNRD2	chr11	65565477	65576888
ZNRF1_chr16_74994024_75115994	1/1	c0001	684	325	98	57	112	14	42	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	c0002	684	2	0	1	0	0	1	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	c0003	684	1	0	0	0	0	1	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF2_chr7_30279597_30372689	1/1	c0001	729	191	79	35	57	3	15	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	c0002	729	8	7	1	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	c0003	729	3	0	0	2	0	1	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	c0004	732	2	0	1	0	1	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	c0005	729	2	0	1	1	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	c0006	729	2	0	2	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF3_chr22_28878572_29062488	0/0	c0001	2811	121	30	12	64	3	12	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	1/0	c0002	2811	67	16	10	30	3	7	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0003	2811	33	18	2	8	0	5	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0004	2811	27	9	11	7	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0005	2811	4	0	0	4	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0006	2811	2	0	0	0	0	2	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0007	2811	2	0	0	0	0	2	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0008	2811	2	2	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0009	2811	2	0	1	0	0	1	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0010	2811	1	0	0	1	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0011	2811	1	0	0	0	0	1	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0012	2811	1	0	0	0	0	1	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0013	2811	1	0	0	1	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0014	2811	1	0	0	1	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/1	c0015	2811	1	0	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0016	2811	1	1	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0017	2811	1	0	0	0	0	1	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0018	2811	1	0	0	1	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	c0019	2811	1	0	0	1	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF4_chr19_5450417_5461856	1/1	c0001	1290	87	11	28	18	11	17	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0002	1290	62	38	5	16	1	2	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0003	1290	57	13	7	35	0	2	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0004	1290	47	0	5	38	0	4	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0005	1290	47	4	24	0	3	16	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0006	1290	45	1	5	37	2	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0007	1290	42	1	2	34	0	5	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0008	1290	11	6	0	5	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0009	1290	6	6	0	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0010	1290	3	3	0	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0011	1290	3	0	2	0	1	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0012	1290	3	0	0	3	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0013	1290	2	2	0	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0014	1290	2	1	1	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856