Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNRF4_chr19_5450417_5461856	0/0	c0015	1290	2	0	0	2	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0016	1290	2	2	0	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0017	1290	1	0	0	0	0	1	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0018	1290	1	0	1	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0019	1290	1	0	0	1	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0020	1290	1	1	0	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0021	1290	1	1	0	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0022	1290	1	0	0	1	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0023	1290	1	0	0	1	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0024	1290	1	0	0	1	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0025	1290	1	0	0	0	0	1	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0026	1290	1	0	0	1	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0027	1290	1	0	0	1	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0028	1290	1	0	0	1	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	c0029	1290	1	0	0	1	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZP1_chr11_60862542_60880687	0/1	c0001	1917	214	56	52	74	9	22	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0002	1917	126	4	12	93	4	13	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0003	1917	16	14	1	0	0	1	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0004	1917	14	0	8	2	3	1	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0005	1917	14	14	0	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0006	1917	6	5	1	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0007	1917	3	0	0	3	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0008	1917	2	2	0	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0009	1917	2	0	0	2	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0010	1917	1	1	0	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0011	1917	1	0	0	1	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0012	1917	1	0	0	0	0	1	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0013	1917	1	0	0	1	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0014	1917	1	0	1	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0015	1917	1	0	1	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0016	1917	1	0	0	1	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0017	1917	1	1	0	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0018	1917	1	0	1	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0019	1917	1	0	0	1	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0020	1917	1	1	0	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0021	1917	1	0	1	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0022	1917	1	0	0	1	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	c0023	1917	1	0	0	1	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	1/0	c0024	1917	1	0	0	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP2_chr16_21192450_21216574	0/1	c0001	2238	146	22	29	76	5	13	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0002	2238	130	29	10	72	3	16	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	1/0	c0003	2238	83	11	19	35	10	7	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0004	2238	49	27	14	0	0	8	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0005	2238	15	5	1	6	0	3	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0006	2238	3	0	1	2	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0007	2238	1	0	0	1	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0008	2238	1	0	1	0	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0009	2238	1	0	1	0	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0010	2238	1	0	0	1	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0011	2238	1	0	0	1	0	0	copy fasta	ZP2	chr16	21192450	21216574