Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZP2_chr16_21192450_21216574	0/0	c0012	2238	1	0	0	0	0	1	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0013	2238	1	1	0	0	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0014	2238	1	1	0	0	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0015	2238	1	0	0	1	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0016	2238	1	1	0	0	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0017	2238	1	0	0	1	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	c0018	2238	1	1	0	0	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP3_chr7_76419950_76447069	1/0	c0001	1275	173	19	29	92	7	25	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0002	1275	112	15	21	64	2	10	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0003	1275	55	25	9	19	1	1	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/1	c0004	1275	33	8	11	6	3	4	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0005	1275	20	14	2	0	2	2	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0006	1275	14	12	2	0	0	0	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0007	1275	3	0	0	2	0	1	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0008	1275	2	0	0	2	0	0	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0009	1275	2	0	2	0	0	0	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0010	1275	2	0	1	0	0	1	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0011	1275	2	2	0	0	0	0	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0012	1275	1	0	0	0	0	1	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0013	1275	1	0	0	0	1	0	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0014	1275	1	0	0	0	0	1	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0015	1275	1	0	1	0	0	0	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0016	1275	1	1	0	0	0	0	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	c0017	1275	1	0	0	1	0	0	copy fasta	ZP3	chr7	76419950	76447069
ZP4_chr1_237877404_237895922	1/1	c0001	1623	373	41	72	195	17	46	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0002	1623	32	30	2	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0003	1623	7	7	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0004	1623	5	0	0	5	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0005	1623	5	4	1	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0006	1623	4	4	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0007	1623	4	0	0	4	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0008	1623	3	1	1	0	1	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0009	1623	2	2	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0010	1623	2	2	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0011	1623	1	0	1	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0012	1623	1	0	0	1	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0013	1623	1	1	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0014	1623	1	1	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0015	1623	1	0	0	1	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0016	1623	1	1	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0017	1636	1	0	0	1	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0018	1623	1	1	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0019	1623	1	1	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0020	1623	1	0	0	1	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	c0021	1623	1	0	1	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZPBP2_chr17_39863202_39882896	1/0	c0001	1017	153	34	25	71	6	16	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0002	1017	114	12	29	57	4	12	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0003	1017	34	0	11	23	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0004	1017	20	13	3	0	3	1	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0005	1017	18	18	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896