Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZPBP2_chr17_39863202_39882896	0/0	c0006	1017	8	0	0	8	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0007	1017	8	8	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0008	1017	5	5	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/1	c0009	1017	4	0	3	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0010	1017	2	0	2	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0011	1017	2	1	0	1	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0012	1017	2	0	2	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0013	1017	1	0	0	1	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0014	1017	1	1	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0015	1017	1	0	1	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0016	1017	1	0	0	0	0	1	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0017	1017	1	1	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0018	1017	1	0	0	1	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0019	1017	1	1	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0020	1017	1	1	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0021	1017	1	0	0	0	1	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	c0022	1017	1	1	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP_chr7_49932441_50098246	1/1	c0001	1056	259	66	47	89	13	42	copy fasta	ZPBP	chr7	49932441	50098246
ZPBP_chr7_49932441_50098246	0/0	c0002	1056	7	0	0	7	0	0	copy fasta	ZPBP	chr7	49932441	50098246
ZPBP_chr7_49932441_50098246	0/0	c0003	1056	5	5	0	0	0	0	copy fasta	ZPBP	chr7	49932441	50098246
ZPBP_chr7_49932441_50098246	0/0	c0004	1056	4	1	0	0	1	2	copy fasta	ZPBP	chr7	49932441	50098246
ZPBP_chr7_49932441_50098246	0/0	c0005	1056	2	0	0	2	0	0	copy fasta	ZPBP	chr7	49932441	50098246
ZPBP_chr7_49932441_50098246	0/0	c0006	1056	1	0	1	0	0	0	copy fasta	ZPBP	chr7	49932441	50098246
ZPLD1_chr3_102430015_102484841	1/1	c0001	1248	220	72	33	74	11	28	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	c0002	1248	35	10	15	5	3	2	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	c0003	1248	3	3	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	c0004	1248	2	2	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	c0005	1248	2	2	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	c0006	1248	2	2	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	c0007	1248	1	0	1	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	c0008	1248	1	0	0	1	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	c0009	1248	1	1	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	c0010	1248	1	0	1	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPR1_chr11_116768799_116793023	1/1	c0001	1380	430	88	61	223	17	39	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	c0002	1380	16	5	11	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	c0003	1380	3	0	2	0	1	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	c0004	1380	2	0	2	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	c0005	1380	2	0	0	2	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	c0006	1380	2	0	2	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	c0007	1380	1	0	1	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	c0008	1380	1	0	1	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	c0009	1380	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	c0010	1380	1	0	0	0	0	1	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	c0011	1380	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZRANB1_chr10_124937123_124993189	1/0	c0001	2127	199	37	41	85	9	26	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/1	c0002	2127	113	47	10	51	0	4	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	c0003	2128	19	4	11	1	1	2	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	c0004	2127	2	2	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	c0005	2127	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	c0006	2127	1	1	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189