Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZRANB1_chr10_124937123_124993189	0/0	c0007	2127	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	c0008	2127	1	1	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	c0009	2127	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB2_chr1_71058291_71086035	1/1	c0001	993	392	75	66	192	13	44	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	0/0	c0002	993	23	18	4	0	1	0	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	0/0	c0003	993	17	3	12	0	0	2	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	0/0	c0004	993	2	2	0	0	0	0	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB3_chr2_135191969_135536218	1/1	c0001	3240	81	17	14	34	0	14	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	c0002	3240	30	10	3	9	0	8	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	c0003	3240	28	15	6	6	0	1	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	c0004	3240	23	0	4	15	0	4	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	c0005	3240	17	17	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	c0006	3240	14	0	5	8	0	1	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	c0007	3240	10	9	1	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	c0008	3240	3	3	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	c0009	3240	3	3	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	c0010	3240	1	0	0	1	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	c0011	3240	1	0	0	0	0	1	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	c0012	3240	1	0	0	1	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	c0013	3240	1	0	1	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	c0014	3240	1	0	0	0	0	1	copy fasta	ZRANB3	chr2	135191969	135536218
ZRSR2_chrX_15785484_15828260	0/1	c0001	1449	168	35	27	81	4	20	copy fasta	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	1/0	c0002	1449	143	35	28	62	7	10	copy fasta	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	c0003	1455	6	5	0	1	0	0	copy fasta	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	c0004	1449	2	0	0	2	0	0	copy fasta	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	c0005	1449	1	0	0	1	0	0	copy fasta	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	c0006	1455	1	1	0	0	0	0	copy fasta	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	c0007	1449	1	0	1	0	0	0	copy fasta	ZRSR2	chrX	15785484	15828260
ZSCAN10_chr16_3083890_3104294	1/0	c0001	2343	217	33	42	113	10	18	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/1	c0002	2343	141	58	25	34	6	17	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0003	2343	59	5	4	47	1	2	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0004	2343	6	0	2	2	0	2	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0005	2343	3	1	0	2	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0006	2343	3	0	0	0	0	3	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0007	2343	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0008	2343	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0009	2343	1	1	0	0	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0010	2343	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0011	2343	1	1	0	0	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0012	2343	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0013	2343	1	0	0	0	0	1	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0014	2343	1	0	1	0	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0015	2343	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0016	2343	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0017	2343	1	0	0	0	0	1	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0018	2343	1	1	0	0	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0019	2343	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0020	2343	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0021	2343	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	c0022	2343	1	0	0	0	1	0	copy fasta	ZSCAN10	chr16	3083890	3104294