Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZSCAN10_chr16_3083890_3104294	0/0	c0023	2343	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN12_chr6_28379738_28404747	1/0	c0001	1836	123	1	21	75	7	18	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/1	c0002	1836	118	42	17	46	4	8	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0003	1836	62	5	9	46	0	2	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0004	1836	59	34	4	13	2	6	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0005	1836	45	5	8	27	1	4	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0006	1836	10	5	4	0	1	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0007	1836	3	1	2	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0008	1836	2	0	0	2	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0009	1836	2	1	1	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0010	1836	1	1	0	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0011	1836	1	0	0	0	0	1	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0012	1836	1	1	0	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0013	1836	1	0	0	1	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0014	1836	1	0	1	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0015	1836	1	0	1	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0016	1836	1	0	0	0	0	1	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	c0017	1836	1	0	0	0	1	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN16_chr6_28119609_28135082	1/1	c0001	1047	414	84	61	212	14	41	copy fasta	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	c0002	1047	6	5	1	0	0	0	copy fasta	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	c0003	1047	5	4	1	0	0	0	copy fasta	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	c0004	1047	1	0	1	0	0	0	copy fasta	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	c0005	1047	1	0	0	0	0	1	copy fasta	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	c0006	1047	1	1	0	0	0	0	copy fasta	ZSCAN16	chr6	28119609	28135082
ZSCAN18_chr19_58078856_58103231	1/0	c0001	1533	345	71	56	166	14	37	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/1	c0002	1533	84	10	20	40	4	9	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0003	1533	6	6	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0004	1533	4	4	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0005	1533	4	4	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0006	1533	3	0	1	0	0	2	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0007	1533	2	2	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0008	1533	2	0	0	2	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0009	1533	2	0	2	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0010	1533	1	0	0	0	0	1	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0011	1533	1	0	1	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0012	1533	1	0	0	0	0	1	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0013	1533	1	1	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0014	1533	1	0	0	1	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0015	1533	1	0	1	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0016	1533	1	0	1	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0017	1533	1	1	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0018	1533	1	0	0	1	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	c0019	1533	1	1	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN1_chr19_58029025_58059631	0/1	c0001	1227	238	61	51	87	7	31	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	1/0	c0002	1227	114	19	14	70	2	8	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	c0003	1227	11	1	9	0	0	1	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	c0004	1227	8	8	0	0	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	c0005	1227	2	0	0	0	0	2	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	c0006	1227	2	0	1	0	1	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	c0007	1227	1	1	0	0	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631