Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AADACL4_chr1_12639085_12672076	0/0	c0007	1224	1	0	0	1	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADAC_chr3_151809116_151833488	0/1	c0001	1200	282	65	53	118	12	33	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	1/0	c0002	1200	140	26	20	80	6	7	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/0	c0003	1200	6	0	0	6	0	0	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/0	c0004	1200	5	0	5	0	0	0	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/0	c0005	1200	3	3	0	0	0	0	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/0	c0006	1200	1	0	1	0	0	0	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/0	c0007	1200	1	0	1	0	0	0	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/0	c0008	1200	1	0	0	1	0	0	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/0	c0009	1200	1	0	0	1	0	0	copy fasta	AADAC	chr3	151809116	151833488
AADAT_chr4_170055222_170094956	1/1	c0001	1278	365	94	62	141	18	48	copy fasta	AADAT	chr4	170055222	170094956
AADAT_chr4_170055222_170094956	0/0	c0002	1278	13	0	0	13	0	0	copy fasta	AADAT	chr4	170055222	170094956
AAGAB_chr15_67195667_67259661	1/1	c0001	948	198	71	34	65	8	18	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	c0002	948	167	9	26	109	6	17	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	c0003	948	6	0	1	5	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	c0004	948	4	0	0	3	0	1	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	c0005	948	3	3	0	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	c0006	948	1	1	0	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	c0007	948	1	0	1	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAK1_chr2_69452997_69648739	0/1	c0001	2886	127	31	24	63	1	7	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0002	2883	83	5	20	48	3	7	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0003	2886	19	5	0	11	0	3	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0004	2886	15	7	1	2	2	3	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0005	2883	9	8	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0006	2886	7	6	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0007	2886	5	5	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0008	2886	4	0	1	2	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0009	2886	3	3	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0010	2886	3	0	3	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0011	2886	3	3	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0012	2886	2	2	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0013	2886	2	2	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0014	2883	2	2	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0015	2883	2	0	0	2	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0016	2883	2	2	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0017	2886	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0018	2886	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0019	2883	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0020	2883	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0021	2883	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	1/0	c0022	2886	1	0	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0023	2886	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0024	2883	1	0	0	0	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0025	2883	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	c0026	2886	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAMDC_chr11_77816144_77877352	1/1	c0001	369	215	34	35	114	11	19	copy fasta	AAMDC	chr11	77816144	77877352
AAMDC_chr11_77816144_77877352	0/0	c0002	369	97	39	18	21	4	15	copy fasta	AAMDC	chr11	77816144	77877352
AAMDC_chr11_77816144_77877352	0/0	c0003	369	68	13	9	45	1	0	copy fasta	AAMDC	chr11	77816144	77877352
AAMDC_chr11_77816144_77877352	0/0	c0004	369	1	0	0	1	0	0	copy fasta	AAMDC	chr11	77816144	77877352
AAMDC_chr11_77816144_77877352	0/0	c0005	369	1	0	0	1	0	0	copy fasta	AAMDC	chr11	77816144	77877352