Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACADM_chr1_75719709_75768679	0/0	c0006	1266	1	0	1	0	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	c0007	1266	1	0	1	0	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	c0008	1266	1	1	0	0	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	c0009	1266	1	1	0	0	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	c0010	1266	1	0	0	1	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	c0011	1266	1	0	0	1	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADSB_chr10_123004006_123063290	1/0	c0001	1299	200	50	28	99	3	19	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0002	1299	72	20	11	29	2	10	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0003	1299	65	10	15	28	2	10	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0004	1299	13	2	7	0	3	1	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0005	1299	5	0	2	3	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0006	1299	4	4	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/1	c0007	1299	3	1	0	0	0	1	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0008	1299	2	0	2	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0009	1299	2	2	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0010	1299	1	0	1	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0011	1299	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0012	1299	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0013	1299	1	0	0	1	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0014	1299	1	0	0	1	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0015	1299	1	0	0	1	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0016	1299	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	c0017	1299	1	0	0	0	0	1	copy fasta	ACADSB	chr10	123004006	123063290
ACADS_chr12_120720826_120745008	0/0	c0001	1239	125	63	19	24	5	14	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	1/0	c0002	1239	107	0	24	58	9	15	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0003	1239	59	0	0	55	0	4	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/1	c0004	1239	54	3	23	15	3	9	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0005	1239	32	0	0	32	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0006	1239	27	23	4	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0007	1239	3	0	2	0	1	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0008	1239	2	2	0	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0009	1239	2	2	0	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0010	1239	2	0	0	2	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0011	1239	2	0	2	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0012	1239	2	1	1	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0013	1239	2	0	0	2	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0014	1239	1	0	0	1	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0015	1239	1	0	0	0	0	1	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0016	1239	1	1	0	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0017	1239	1	0	1	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0018	1239	1	0	0	0	0	1	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0019	1239	1	0	0	1	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	c0020	1239	1	1	0	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADVL_chr17_7214938_7230266	1/1	c0001	1968	316	57	69	134	16	38	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	c0002	1968	41	4	3	34	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	c0003	1968	10	9	1	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	c0004	1968	7	7	0	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	c0005	1968	7	7	0	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	c0006	1968	5	4	1	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	c0007	1968	3	3	0	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266