Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZSCAN1_chr19_58029025_58059631	0/0	c0008	1227	1	0	0	1	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	c0009	1227	1	1	0	0	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	c0010	1227	1	1	0	0	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	c0011	1227	1	0	1	0	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN20_chr1_33467645_33506643	0/0	c0001	3132	186	55	18	88	8	17	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/1	c0002	3132	98	16	20	46	4	11	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0003	3132	79	1	14	53	1	10	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0004	3132	18	5	7	2	2	2	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0005	3132	7	7	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0006	3132	5	0	0	5	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0007	3132	4	0	3	0	0	1	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0008	3132	3	3	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0009	3132	2	0	1	0	1	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0010	3132	2	0	1	0	1	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0011	3132	2	0	0	0	0	2	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0012	3132	2	0	0	2	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0013	3132	2	0	0	1	0	1	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0014	3132	1	0	1	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0015	3132	1	0	0	0	1	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0016	3132	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0017	3132	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0018	3132	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0019	3132	1	0	0	0	0	1	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0020	3132	1	0	0	0	0	1	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0021	3132	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0022	3132	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	1/0	c0023	3132	1	0	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0024	3132	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	c0025	3132	1	0	1	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN21_chr7_100044774_100070040	1/1	c0001	1422	243	77	47	83	9	25	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	c0002	1422	138	8	22	84	5	19	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	c0003	1422	5	0	1	4	0	0	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	c0004	1422	1	0	0	0	0	1	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	c0005	1422	1	0	0	0	0	1	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	c0006	1422	1	1	0	0	0	0	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	c0007	1422	1	0	0	1	0	0	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	c0008	1422	1	0	0	1	0	0	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	c0009	1422	1	0	0	1	0	0	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN22_chr19_58321994_58347332	1/1	c0001	1476	304	56	65	132	15	34	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0002	1476	61	19	10	27	3	2	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0003	1476	6	6	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0004	1476	3	0	3	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0005	1476	3	3	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0006	1476	3	0	3	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0007	1476	3	0	0	0	0	3	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0008	1476	2	2	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0009	1476	2	0	0	0	0	2	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0010	1476	2	0	0	2	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0011	1476	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0012	1476	1	0	1	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332