Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZSCAN22_chr19_58321994_58347332	0/0	c0013	1476	1	0	1	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0014	1476	1	0	0	0	0	1	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0015	1476	1	0	1	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0016	1476	1	0	1	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0017	1476	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0018	1476	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0019	1476	1	0	0	1	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0020	1476	1	0	1	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	c0021	1476	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN23_chr6_28427655_28448491	1/1	c0001	1170	366	82	63	168	13	38	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	c0002	1170	59	8	11	35	1	4	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	c0003	1170	3	3	0	0	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	c0004	1170	1	1	0	0	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	c0005	1170	1	0	0	1	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	c0006	1170	1	1	0	0	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	c0007	1170	1	0	0	1	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	c0008	1170	1	0	0	1	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	c0009	1170	1	1	0	0	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN25_chr7_99611946_99637408	1/1	c0001	1635	199	27	43	95	12	20	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	c0002	1635	121	43	6	55	2	15	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	c0003	1635	14	10	4	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	c0004	1635	8	8	0	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	c0005	1635	6	6	0	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	c0006	1635	5	0	1	4	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	c0007	1635	5	0	0	5	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	c0008	1635	1	0	0	1	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	c0009	1635	1	0	0	0	0	1	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	c0010	1635	1	1	0	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	c0011	1635	1	1	0	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN26_chr6_28262143_28283204	1/1	c0001	1440	253	40	51	112	12	36	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	c0002	1440	64	23	11	29	1	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	c0003	1440	58	3	8	46	0	1	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	c0004	1440	27	10	1	13	1	2	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	c0005	1440	16	15	1	0	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	c0006	1440	2	0	0	0	0	2	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	c0007	1440	1	0	1	0	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	c0008	1440	1	0	1	0	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	c0009	1440	1	0	0	0	0	1	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	c0010	1440	1	1	0	0	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN29_chr15_43353175_43376043	0/0	c0001	2559	173	50	14	97	1	11	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	1/1	c0002	2559	160	3	33	98	7	17	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	c0003	2559	25	13	5	0	0	7	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	c0004	2559	13	13	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	c0005	2559	6	0	2	0	4	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	c0006	2556	6	6	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	c0007	2559	2	0	0	0	0	2	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	c0008	2559	1	0	0	1	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	c0009	2559	1	0	0	0	0	1	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	c0010	2559	1	0	0	1	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	c0011	2559	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043