Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZSCAN29_chr15_43353175_43376043	0/0	c0012	2559	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	c0013	2559	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	c0014	2559	1	0	0	1	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	c0015	2559	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	c0016	2559	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN2_chr15_84596009_84628716	0/1	c0001	1845	359	92	54	170	10	32	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	1/0	c0002	1845	38	3	13	3	2	16	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	c0003	1845	5	4	1	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	c0004	1845	2	0	0	2	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	c0005	1845	1	0	0	1	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	c0006	1845	1	1	0	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	c0007	1845	1	0	0	0	1	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	c0008	1845	1	0	0	0	1	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN30_chr18_35246062_35295229	1/0	c0001	1485	309	77	49	143	15	24	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	c0002	1485	42	0	6	34	1	1	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	c0003	1485	13	10	3	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/1	c0004	1485	10	6	2	0	0	1	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	c0005	1485	6	2	3	0	0	1	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	c0006	1485	1	0	1	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	c0007	1485	1	1	0	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	c0008	1485	1	0	0	1	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	c0009	1485	1	0	0	0	0	1	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN31_chr6_28319737_28341148	0/1	c0001	1221	158	29	24	86	5	13	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	1/0	c0002	1221	119	3	27	61	4	23	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	c0003	1221	81	39	14	26	1	1	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	c0004	1221	30	13	1	13	1	2	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	c0005	1221	8	6	2	0	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	c0006	1219	8	0	2	5	0	1	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	c0007	1221	5	0	2	0	3	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	c0008	1221	3	3	0	0	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	c0009	1221	2	0	0	0	0	2	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	c0010	1221	1	0	0	1	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	c0011	1221	1	1	0	0	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN32_chr16_3377085_3406004	1/1	c0001	2094	266	42	55	119	12	36	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0002	2094	78	33	9	28	1	7	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0003	2094	22	1	14	0	5	2	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0004	2094	9	9	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0005	2094	4	3	1	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0006	2094	3	0	0	3	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0007	2094	2	2	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0008	2094	2	0	2	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0009	2094	2	2	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0010	2094	2	0	2	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0011	2094	1	1	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0012	2094	1	0	0	1	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0013	2094	1	1	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0014	2094	1	1	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0015	2094	1	1	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0016	2094	1	0	0	0	0	1	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0017	2094	1	0	0	1	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004