Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZSCAN32_chr16_3377085_3406004	0/0	c0018	2094	1	0	1	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0019	2094	1	0	0	1	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	c0020	2094	1	0	0	1	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN4_chr19_57663935_57684152	1/1	c0001	1302	313	69	65	137	7	33	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	c0002	1302	95	12	10	60	7	6	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	c0003	1302	10	9	1	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	c0004	1302	2	0	2	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	c0005	1302	1	0	1	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	c0006	1302	1	1	0	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	c0007	1302	1	1	0	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	c0008	1302	1	0	1	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	c0009	1302	1	0	0	1	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	c0010	1302	1	0	0	0	0	1	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN5A_chr19_56216303_56319839	1/1	c0001	1491	277	69	57	111	6	32	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	c0002	1491	52	5	15	23	6	3	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	c0003	1491	13	8	2	0	0	3	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	c0004	1491	5	5	0	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	c0005	1491	3	3	0	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	c0006	1491	3	0	1	0	0	2	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	c0007	1491	2	2	0	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	c0008	1491	1	1	0	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	c0009	1491	1	1	0	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	c0010	1491	1	0	1	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	c0011	1491	1	0	1	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	c0012	1491	1	0	1	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	c0013	1491	1	0	0	0	0	1	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	c0014	1491	1	0	0	0	0	1	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5B_chr19_56184686_56202783	1/0	c0001	1488	132	15	32	64	5	15	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0002	1488	112	35	16	41	9	11	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/1	c0003	1488	92	2	18	57	1	13	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0004	1488	52	1	9	41	0	1	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0005	1488	17	0	0	17	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0006	1488	6	6	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0007	1488	6	6	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0008	1488	6	6	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0009	1488	5	4	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0010	1488	4	0	0	0	0	4	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0011	1488	3	3	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0012	1488	3	3	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0013	1488	3	0	0	3	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0014	1488	2	1	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0015	1488	2	2	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0016	1488	2	1	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0017	1488	1	0	0	0	0	1	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0018	1488	1	1	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0019	1488	1	1	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0020	1488	1	1	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0021	1488	1	0	0	1	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0022	1488	1	0	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0023	1488	1	1	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783