Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZSCAN5B_chr19_56184686_56202783	0/0	c0024	1488	1	0	0	0	0	1	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0025	1488	1	1	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0026	1488	1	0	0	0	0	1	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0027	1488	1	0	0	1	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0028	1488	1	0	0	0	1	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0029	1488	1	1	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0030	1488	1	1	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0031	1488	1	0	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0032	1488	1	0	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0033	1488	1	0	0	1	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0034	1488	1	0	0	0	0	1	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0035	1488	1	0	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0036	1488	1	0	0	1	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0037	1488	1	0	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0038	1488	1	0	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	c0039	1488	1	0	0	1	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5C_chr19_56197273_56214461	0/0	c0000	0	4	4	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0001	1491	95	16	15	54	7	3	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	1/1	c0002	1491	82	3	11	38	4	24	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0003	1491	62	3	4	47	0	8	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0004	1491	45	1	11	33	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0005	1491	43	0	24	14	2	3	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0006	1491	21	10	6	5	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0007	1491	15	3	2	6	2	2	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0008	1491	11	0	0	11	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0009	1491	7	6	1	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0010	1491	6	6	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0011	1491	5	0	2	0	2	1	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0012	1491	5	1	1	0	1	2	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0013	1491	5	5	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0014	1491	4	0	0	4	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0015	1491	4	4	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0016	1491	3	0	0	3	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0017	1491	3	3	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0018	1491	3	0	1	1	0	1	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0019	1491	3	3	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0020	1491	3	3	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0021	1491	3	3	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0022	1491	2	0	2	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0023	1491	2	0	0	2	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0024	1491	2	0	1	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0025	1491	2	2	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0026	1491	2	2	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0027	1491	2	2	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0028	1491	2	2	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0029	1491	2	1	1	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0030	1491	1	0	0	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0031	1491	1	0	0	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0032	1491	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0033	1491	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461