Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZSWIM2_chr2_186822475_186854170	0/0	c0017	1902	1	0	1	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0018	1902	1	0	0	1	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM3_chr20_45852614_45884122	1/0	c0001	2091	164	51	20	74	3	15	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/1	c0002	2091	144	22	27	75	7	12	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	c0003	2091	49	11	4	28	0	6	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	c0004	2091	8	7	1	0	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	c0005	2091	7	6	1	0	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	c0006	2091	3	0	1	1	0	1	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	c0007	2091	3	0	0	3	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	c0008	2091	1	0	0	0	0	1	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	c0009	2091	1	0	1	0	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	c0010	2091	1	0	0	1	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	c0011	2091	1	0	0	1	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	c0012	2091	1	0	0	1	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	c0013	2091	1	1	0	0	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	c0014	2091	1	0	1	0	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	c0015	2091	1	0	0	0	0	1	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM4_chr19_13790443_13837254	1/1	c0001	3321	227	34	50	108	7	26	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0002	3321	28	7	6	15	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0003	3321	19	8	0	6	1	4	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0004	3321	17	2	2	8	3	2	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0005	3321	12	7	4	0	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0006	3321	9	9	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0007	3321	5	5	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0008	3321	4	4	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0009	3321	3	3	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0010	3321	3	3	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0011	3321	2	2	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0012	3321	2	2	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0013	3321	2	2	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0014	3321	2	2	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0015	3321	2	0	2	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0016	3321	2	0	1	0	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0017	3321	1	1	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0018	3321	1	1	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0019	3321	1	1	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0020	3321	1	0	0	0	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0021	3321	1	1	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0022	3321	1	0	0	1	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0023	3321	1	0	0	0	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0024	3321	1	0	0	1	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0025	3321	1	0	0	0	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0026	3321	1	0	0	0	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0027	3321	1	0	0	1	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0028	3321	1	0	0	0	1	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0029	3321	1	0	0	1	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0030	3321	1	0	0	0	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0031	3321	1	0	0	0	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0032	3321	1	0	0	1	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	c0033	3321	1	0	1	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254