Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZW10_chr11_113728187_113778692	0/1	c0008	2340	1	0	0	0	0	0	copy fasta	ZW10	chr11	113728187	113778692
ZWILCH_chr15_66500326_66555130	1/0	c0001	1776	312	82	48	143	8	30	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/1	c0002	1776	62	3	15	26	5	12	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	c0003	1776	23	2	5	11	1	4	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	c0004	1776	3	3	0	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	c0005	1776	2	2	0	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	c0006	1776	2	0	0	2	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	c0007	1776	1	1	0	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	c0008	1776	1	0	0	1	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	c0009	1776	1	0	1	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	c0010	1776	1	0	0	1	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	c0011	1776	1	0	1	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	c0012	1776	1	1	0	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWINT_chr10_56352227_56366259	0/1	c0001	834	307	50	60	160	10	26	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	1/0	c0002	834	61	14	10	22	4	10	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	c0003	834	44	17	8	18	0	1	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	c0004	834	9	0	0	8	0	1	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	c0005	840	6	6	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	c0006	834	3	3	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	c0007	834	3	3	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	c0008	834	2	0	0	0	0	2	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	c0009	834	2	2	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	c0010	834	1	1	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	c0011	840	1	1	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	c0012	834	1	1	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZXDA_chrX_57900430_57915458	1/0	c0001	2400	171	34	27	82	7	20	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/1	c0002	2400	78	3	16	47	2	9	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0003	2400	15	12	3	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0004	2400	8	8	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0005	2400	6	0	3	3	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0006	2400	5	4	0	1	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0007	2406	4	0	0	4	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0008	2400	4	0	0	4	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0009	2400	4	4	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0010	2400	4	2	2	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0011	2400	2	1	1	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0012	2400	2	2	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0013	2400	2	2	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0014	2412	2	0	0	2	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0015	2400	1	0	0	1	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0016	2400	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0017	2400	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0018	2400	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0019	2400	1	0	0	0	0	1	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0020	2401	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0021	2401	1	0	0	0	0	1	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0022	2400	1	0	1	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0023	2400	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0024	2400	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0025	2400	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458