JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C10orf71_chr10_49294170_49332492	0/0	c0014	4308	3	3	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0015	4308	3	3	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0016	4308	2	1	1	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0017	4308	2	1	1	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0018	4308	2	2	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0019	4308	2	2	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0020	4308	2	0	2	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0021	4308	2	0	0	2	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0022	4308	2	2	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0023	4308	2	0	2	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0024	4308	2	2	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0025	4308	2	0	0	2	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0026	4308	2	0	1	0	1	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0027	4308	1	1	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0028	4308	1	0	1	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0029	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0030	4308	1	1	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0031	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0032	4308	1	0	0	0	0	1	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0033	4308	1	0	0	0	0	1	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0034	4308	1	0	0	0	0	1	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0035	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0036	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0037	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0038	4308	1	1	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0039	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0040	4308	1	0	0	0	0	1	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0041	4308	1	1	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0042	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0043	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0044	4308	1	1	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0045	4308	1	1	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0046	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0047	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0048	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0049	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0050	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0051	4308	1	1	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0052	4308	1	1	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0053	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	c0054	4308	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf82_chr10_116658696_116674966	1/1	c0001	705	398	70	73	190	18	45	copy fasta	C10orf82	chr10	116658696	116674966
C10orf82_chr10_116658696_116674966	0/0	c0002	705	48	17	2	28	0	1	copy fasta	C10orf82	chr10	116658696	116674966
C10orf82_chr10_116658696_116674966	0/0	c0003	705	6	0	0	6	0	0	copy fasta	C10orf82	chr10	116658696	116674966
C10orf82_chr10_116658696_116674966	0/0	c0004	705	5	5	0	0	0	0	copy fasta	C10orf82	chr10	116658696	116674966
C10orf82_chr10_116658696_116674966	0/0	c0005	705	5	4	1	0	0	0	copy fasta	C10orf82	chr10	116658696	116674966
C10orf82_chr10_116658696_116674966	0/0	c0006	705	2	2	0	0	0	0	copy fasta	C10orf82	chr10	116658696	116674966
C10orf82_chr10_116658696_116674966	0/0	c0007	705	1	1	0	0	0	0	copy fasta	C10orf82	chr10	116658696	116674966
C10orf82_chr10_116658696_116674966	0/0	c0008	705	1	1	0	0	0	0	copy fasta	C10orf82	chr10	116658696	116674966
C10orf88_chr10_122925901_122959227	1/1	c0001	1338	393	87	77	176	16	35	copy fasta	C10orf88	chr10	122925901	122959227