Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZXDA_chrX_57900430_57915458	0/0	c0026	2400	1	0	1	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	c0027	2400	1	0	0	0	0	1	copy fasta	ZXDA	chrX	57900430	57915458
ZXDB_chrX_57587011_57602477	0/1	c0001	2412	237	45	38	121	9	23	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0002	2412	23	18	5	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0003	2421	11	1	10	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0004	2412	4	0	2	0	0	2	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0005	2412	3	0	0	2	0	1	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0006	2412	3	0	0	3	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0007	2412	3	3	0	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0008	2412	2	0	0	2	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0009	2412	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0010	2400	1	0	1	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0011	2412	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	1/0	c0012	2412	1	0	0	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0013	2412	1	1	0	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0014	2412	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0015	2412	1	1	0	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0016	2412	1	1	0	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0017	2418	1	0	1	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0018	2421	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	c0019	2412	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDC_chr3_126432601_126480891	0/0	c0001	2577	180	16	34	93	8	29	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/1	c0002	2577	146	54	20	61	3	7	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0003	2577	13	0	8	4	0	1	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0004	2577	10	0	0	8	0	2	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0005	2577	8	0	3	1	1	3	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	1/0	c0006	2577	6	5	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0007	2577	5	5	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0008	2577	3	2	1	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0009	2577	2	2	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0010	2577	2	0	0	2	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0011	2577	2	0	2	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0012	2577	2	2	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0013	2577	1	1	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0014	2577	1	1	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0015	2577	1	0	1	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0016	2577	1	1	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0017	2577	1	0	0	0	0	1	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0018	2577	1	0	0	1	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0019	2577	1	0	1	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0020	2577	1	0	0	0	0	1	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0021	2577	1	0	0	1	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0022	2577	1	0	0	1	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	c0023	2577	1	1	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZYG11A_chr1_52837760_52899998	0/1	c0001	2280	151	69	19	44	3	15	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	1/0	c0002	2280	112	9	28	57	4	13	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	c0003	2280	7	3	4	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	c0004	2280	5	3	2	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	c0005	2280	2	0	0	2	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	c0006	2280	2	0	0	2	0	0	copy fasta	ZYG11A	chr1	52837760	52899998