Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZYG11A_chr1_52837760_52899998	0/0	c0007	2280	2	0	1	0	1	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	c0008	2280	1	0	0	1	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	c0009	2280	1	0	0	1	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	c0010	2280	1	1	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	c0011	2280	1	0	0	1	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	c0012	2280	1	1	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	c0013	2280	1	1	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	c0014	2280	1	1	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	c0015	2280	1	1	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	c0016	2280	1	1	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11B_chr1_52721453_52832336	0/0	c0001	2235	292	66	36	162	7	21	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	1/1	c0002	2235	38	5	14	3	1	13	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	c0003	2235	17	15	2	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	c0004	2235	2	0	0	2	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	c0005	2235	2	2	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	c0006	2235	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYX_chr7_143376345_143396111	1/1	c0001	1719	382	41	72	207	16	44	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0002	1719	41	32	4	0	0	5	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0003	1719	6	5	1	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0004	1719	6	6	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0005	1719	4	1	1	0	2	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0006	1719	2	2	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0007	1719	2	2	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0008	1719	1	0	0	0	0	1	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0009	1719	1	1	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0010	1719	1	1	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0011	1719	1	0	0	1	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0012	1719	1	1	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0013	1730	1	0	0	1	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0014	1719	1	1	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0015	1719	1	0	0	1	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0016	1719	1	1	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0017	1719	1	1	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	c0018	1719	1	1	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZZEF1_chr17_3999445_4148030	0/0	c0001	8886	85	8	25	40	2	10	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0002	8886	30	3	2	20	1	4	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0003	8886	24	2	5	11	0	6	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0004	8886	18	0	1	16	0	1	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0005	8886	13	12	1	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0006	8886	10	10	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0007	8886	8	0	5	3	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0008	8886	8	2	3	0	1	2	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0009	8886	7	5	2	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0010	8886	6	6	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0011	8886	6	5	1	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0012	8886	5	0	0	5	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0013	8886	4	0	0	4	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0014	8886	3	0	3	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/1	c0015	8886	3	0	0	0	0	2	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0016	8886	3	1	2	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030