Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZZEF1_chr17_3999445_4148030	0/0	c0017	8886	3	3	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0018	8886	3	3	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0019	8886	3	3	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0020	8886	3	2	1	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0021	8886	2	2	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0022	8886	2	2	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0023	8886	2	0	0	2	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0024	8886	2	2	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0025	8886	2	0	2	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0026	8886	2	0	0	0	0	2	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0027	8886	2	0	2	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0028	8886	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0029	8886	1	0	0	0	0	1	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0030	8886	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0031	8886	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0032	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0033	8886	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0034	8886	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0035	8886	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0036	8886	1	0	1	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0037	8886	1	0	1	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0038	8886	1	0	1	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0039	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0040	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0041	8886	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0042	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0043	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0044	8886	1	0	0	0	1	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0045	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0046	8886	1	0	0	0	0	1	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0047	8886	1	0	0	0	0	1	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0048	8886	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0049	8886	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0050	8886	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0051	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0052	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0053	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0054	8886	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0055	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0056	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	1/0	c0057	8886	1	0	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0058	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0059	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0060	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0061	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0062	8886	1	0	0	0	1	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0063	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	c0064	8886	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZZ3_chr1_77557416_77687658	1/1	c0001	2712	325	83	53	141	8	38	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	c0002	2712	8	0	4	4	0	0	copy fasta	ZZZ3	chr1	77557416	77687658