Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	cseq	genename	chr	start	end
ZZZ3_chr1_77557416_77687658	0/0	c0003	2712	4	0	0	4	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	c0004	2712	2	0	0	2	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	c0005	2712	2	0	2	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	c0006	2712	1	1	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	c0007	2712	1	0	0	1	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	c0008	2712	1	0	1	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	c0009	2712	1	0	0	1	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	c0010	2712	1	0	1	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	c0011	2712	1	0	1	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	c0012	2712	1	0	0	1	copy fasta	ZZZ3	chr1	77557416	77687658