JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C11orf16_chr11_8915076_8937947	0/0	c0003	1404	75	9	17	26	6	17	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	1/0	c0004	1404	27	21	5	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0005	1404	19	4	2	11	0	2	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0006	1404	10	10	0	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0007	1402	9	7	2	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0008	1404	6	6	0	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0009	1404	5	0	2	0	0	3	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0010	1404	4	0	0	4	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0011	1402	2	2	0	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0012	1404	2	2	0	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0013	1404	1	0	0	1	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0014	1404	1	1	0	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0015	1404	1	0	0	1	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0016	1404	1	0	1	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0017	1404	1	0	0	1	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0018	1404	1	0	0	1	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0019	1402	1	1	0	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0020	1404	1	0	0	1	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0021	1404	1	1	0	0	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0022	1404	1	0	0	1	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf16_chr11_8915076_8937947	0/0	c0023	1404	1	0	0	1	0	0	copy fasta	C11orf16	chr11	8915076	8937947
C11orf21_chr11_2290628_2306918	0/0	c0001	399	152	44	30	52	10	16	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	1/0	c0002	399	118	4	13	95	1	4	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	c0003	399	78	30	21	17	2	8	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/1	c0004	399	71	10	20	17	5	18	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	c0005	399	6	6	0	0	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf21_chr11_2290628_2306918	0/0	c0006	399	1	0	0	1	0	0	copy fasta	C11orf21	chr11	2290628	2306918
C11orf24_chr11_68256338_68276973	0/0	c0001	1350	142	16	29	69	4	24	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	c0002	1350	141	17	17	85	8	14	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	1/1	c0003	1350	82	43	22	9	4	2	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	c0004	1350	16	0	0	12	0	4	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	c0005	1350	12	12	0	0	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	c0006	1350	2	1	1	0	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	c0007	1350	1	0	0	1	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	c0008	1350	1	0	1	0	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	c0009	1350	1	1	0	0	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	c0010	1350	1	1	0	0	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf24_chr11_68256338_68276973	0/0	c0011	1350	1	1	0	0	0	0	copy fasta	C11orf24	chr11	68256338	68276973
C11orf42_chr11_6200557_6216135	0/1	c0001	1002	265	36	57	136	11	24	copy fasta	C11orf42	chr11	6200557	6216135
C11orf42_chr11_6200557_6216135	1/0	c0002	1002	157	52	23	55	5	21	copy fasta	C11orf42	chr11	6200557	6216135
C11orf42_chr11_6200557_6216135	0/0	c0003	1002	9	0	0	9	0	0	copy fasta	C11orf42	chr11	6200557	6216135
C11orf42_chr11_6200557_6216135	0/0	c0004	1002	3	0	0	3	0	0	copy fasta	C11orf42	chr11	6200557	6216135
C11orf42_chr11_6200557_6216135	0/0	c0005	1002	2	2	0	0	0	0	copy fasta	C11orf42	chr11	6200557	6216135
C11orf42_chr11_6200557_6216135	0/0	c0006	1002	1	0	0	0	0	1	copy fasta	C11orf42	chr11	6200557	6216135
C11orf42_chr11_6200557_6216135	0/0	c0007	1002	1	1	0	0	0	0	copy fasta	C11orf42	chr11	6200557	6216135
C11orf42_chr11_6200557_6216135	0/0	c0008	1002	1	0	0	1	0	0	copy fasta	C11orf42	chr11	6200557	6216135
C11orf42_chr11_6200557_6216135	0/0	c0009	1002	1	1	0	0	0	0	copy fasta	C11orf42	chr11	6200557	6216135
C11orf52_chr11_111913913_111931871	1/1	c0001	372	223	82	42	67	5	25	copy fasta	C11orf52	chr11	111913913	111931871
C11orf52_chr11_111913913_111931871	0/0	c0002	372	128	10	24	82	1	11	copy fasta	C11orf52	chr11	111913913	111931871
C11orf52_chr11_111913913_111931871	0/0	c0003	372	2	0	2	0	0	0	copy fasta	C11orf52	chr11	111913913	111931871