JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C12orf42_chr12_103296955_103500968	0/0	c0014	1083	1	1	0	0	0	0	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	c0015	1083	1	0	1	0	0	0	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	c0016	1083	1	0	0	0	0	1	copy fasta	C12orf42	chr12	103296955	103500968
C12orf42_chr12_103296955_103500968	0/0	c0017	1083	1	1	0	0	0	0	copy fasta	C12orf42	chr12	103296955	103500968
C12orf43_chr12_120995486_121021487	0/1	c0001	789	192	20	41	105	9	16	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	1/0	c0002	789	77	39	4	22	2	9	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	0/0	c0003	789	52	0	6	38	3	5	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	0/0	c0004	789	36	20	12	2	2	0	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	0/0	c0005	789	34	0	2	27	2	3	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	0/0	c0006	789	10	10	0	0	0	0	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	0/0	c0007	789	7	0	6	0	0	1	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	0/0	c0008	789	4	0	0	0	0	4	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	0/0	c0009	789	2	0	0	2	0	0	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	0/0	c0010	789	1	1	0	0	0	0	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	0/0	c0011	789	1	0	1	0	0	0	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	0/0	c0012	789	1	0	0	1	0	0	copy fasta	C12orf43	chr12	120995486	121021487
C12orf43_chr12_120995486_121021487	0/0	c0013	789	1	0	0	1	0	0	copy fasta	C12orf43	chr12	120995486	121021487
C12orf4_chr12_4482735_4543469	1/1	c0001	1659	203	78	35	62	4	22	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	c0002	1659	9	8	1	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	c0003	1659	8	0	6	0	0	2	copy fasta	C12orf4	chr12	4482735	4543469
C12orf50_chr12_87975035_88034401	1/1	c0001	1245	166	15	43	80	9	17	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	c0002	1245	78	49	8	15	0	6	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	c0003	1245	9	9	0	0	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	c0004	1245	6	6	0	0	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	c0005	1245	4	1	2	0	0	1	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	c0006	1245	4	4	0	0	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	c0007	1245	1	1	0	0	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	c0008	1245	1	0	0	0	1	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	c0009	1245	1	0	1	0	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	c0010	1245	1	1	0	0	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	c0011	1245	1	0	0	1	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf54_chr12_48477498_48501524	1/0	c0001	384	305	76	51	143	9	25	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/1	c0002	384	85	1	19	43	7	14	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/0	c0003	384	27	5	7	12	2	1	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/0	c0004	384	11	1	6	0	0	4	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/0	c0005	384	4	4	0	0	0	0	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/0	c0006	384	2	0	0	2	0	0	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/0	c0007	384	1	1	0	0	0	0	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/0	c0008	384	1	0	1	0	0	0	copy fasta	C12orf54	chr12	48477498	48501524
C12orf56_chr12_64259762_64395758	0/1	c0001	1869	91	14	17	49	3	7	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	c0002	1872	64	29	11	14	2	8	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	c0003	1869	57	4	17	26	5	5	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	c0004	1872	53	0	10	35	1	7	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	c0005	1872	16	16	0	0	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	c0006	1869	10	6	0	1	0	3	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	1/0	c0007	1869	6	5	0	0	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	c0008	1869	4	3	1	0	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	c0009	1872	3	2	0	1	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	c0010	1869	2	0	0	2	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	c0011	1869	1	0	0	0	1	0	copy fasta	C12orf56	chr12	64259762	64395758