Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACADVL_chr17_7214938_7230266	0/0	c0008	1968	2	2	0	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	c0009	1968	1	1	0	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	c0010	1968	1	0	0	1	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	c0011	1968	1	0	0	1	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	c0012	1968	1	0	0	0	0	1	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	c0013	1968	1	1	0	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	c0014	1968	1	0	0	0	0	1	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	c0015	1968	1	1	0	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACAN_chr15_88798436_88880353	0/0	c0001	7764	26	2	7	13	1	3	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/1	c0002	7707	19	0	5	7	3	3	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0003	7650	13	0	0	13	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0004	7707	10	3	0	6	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0005	7707	10	0	0	9	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0006	7593	9	0	1	8	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0007	7707	8	0	5	0	1	2	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0008	7707	7	0	5	2	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0009	7422	7	6	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0010	7707	6	0	2	4	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0011	7650	6	0	5	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0012	7137	4	4	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0013	7707	4	1	1	0	1	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0014	7707	4	0	1	3	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0015	7707	4	0	2	2	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0016	7650	4	0	0	4	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0017	7707	3	0	3	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0018	7764	3	0	0	3	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0019	7764	3	3	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0020	7764	3	0	3	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0021	7764	3	0	3	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0022	7650	3	0	1	0	1	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0023	7821	3	0	0	3	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0024	7422	3	2	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0025	7707	3	0	1	2	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0026	7707	3	0	0	3	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0027	7308	2	2	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0028	7707	2	0	0	2	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0029	7707	2	0	2	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0030	7650	2	0	0	2	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0031	7821	2	0	0	0	2	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0032	7764	2	2	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0033	7650	2	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0034	7365	2	2	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0035	7707	2	0	1	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0036	7707	2	2	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0037	7707	2	0	2	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0038	7707	2	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0039	7707	2	0	0	0	1	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0040	7764	2	0	2	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0041	7479	2	2	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0042	7707	2	0	1	1	0	0	copy fasta	ACAN	chr15	88798436	88880353