JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C15orf61_chr15_67516131_67535146	0/0	c0003	474	1	0	1	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	c0004	498	1	0	0	0	0	1	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	c0005	474	1	0	0	1	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	c0006	474	1	1	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	c0007	474	1	0	0	1	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf62_chr15_40764980_40777449	1/1	c0001	528	372	84	68	164	13	41	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	c0002	528	24	5	6	6	2	5	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	c0003	528	3	3	0	0	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	c0004	528	1	0	0	0	1	0	copy fasta	C15orf62	chr15	40764980	40777449
C16orf46_chr16_81055980_81082238	0/0	c0001	1188	223	39	44	104	8	28	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	c0002	1188	62	7	6	41	1	7	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	c0003	1188	23	0	0	23	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/1	c0004	1188	22	1	12	1	3	4	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	c0005	1188	19	11	1	7	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	1/0	c0006	1188	19	17	1	0	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	c0007	1188	18	3	1	14	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	c0008	1188	7	7	0	0	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	c0009	1188	3	3	0	0	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	c0010	1188	2	0	2	0	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	c0011	1188	2	2	0	0	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	c0012	1188	2	1	1	0	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	c0013	1188	1	0	0	1	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	c0014	1188	1	0	0	1	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	c0015	1188	1	0	0	0	0	1	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	c0016	1188	1	1	0	0	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf54_chr16_29737463_29750990	1/1	c0001	675	304	87	58	106	13	38	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	c0002	675	4	4	0	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	c0003	675	1	1	0	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	c0004	656	1	0	0	0	1	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf74_chr16_85702517_85756096	1/1	c0001	231	406	91	77	172	18	46	copy fasta	C16orf74	chr16	85702517	85756096
C16orf74_chr16_85702517_85756096	0/0	c0002	222	4	3	1	0	0	0	copy fasta	C16orf74	chr16	85702517	85756096
C16orf78_chr16_49368804_49404431	1/1	c0001	798	310	61	66	131	16	34	copy fasta	C16orf78	chr16	49368804	49404431
C16orf78_chr16_49368804_49404431	0/0	c0002	798	22	3	0	18	0	1	copy fasta	C16orf78	chr16	49368804	49404431
C16orf78_chr16_49368804_49404431	0/0	c0003	798	12	12	0	0	0	0	copy fasta	C16orf78	chr16	49368804	49404431
C16orf78_chr16_49368804_49404431	0/0	c0004	786	5	5	0	0	0	0	copy fasta	C16orf78	chr16	49368804	49404431
C16orf78_chr16_49368804_49404431	0/0	c0005	798	2	0	2	0	0	0	copy fasta	C16orf78	chr16	49368804	49404431
C16orf78_chr16_49368804_49404431	0/0	c0006	798	2	2	0	0	0	0	copy fasta	C16orf78	chr16	49368804	49404431
C16orf78_chr16_49368804_49404431	0/0	c0007	798	1	0	0	1	0	0	copy fasta	C16orf78	chr16	49368804	49404431
C16orf78_chr16_49368804_49404431	0/0	c0008	798	1	0	0	0	0	1	copy fasta	C16orf78	chr16	49368804	49404431
C16orf78_chr16_49368804_49404431	0/0	c0009	798	1	1	0	0	0	0	copy fasta	C16orf78	chr16	49368804	49404431
C16orf82_chr16_27061927_27074166	1/1	c0001	465	420	77	70	211	16	44	copy fasta	C16orf82	chr16	27061927	27074166
C16orf82_chr16_27061927_27074166	0/0	c0002	465	8	8	0	0	0	0	copy fasta	C16orf82	chr16	27061927	27074166
C16orf82_chr16_27061927_27074166	0/0	c0003	465	4	4	0	0	0	0	copy fasta	C16orf82	chr16	27061927	27074166
C16orf82_chr16_27061927_27074166	0/0	c0004	465	3	0	0	3	0	0	copy fasta	C16orf82	chr16	27061927	27074166
C16orf82_chr16_27061927_27074166	0/0	c0005	465	3	3	0	0	0	0	copy fasta	C16orf82	chr16	27061927	27074166
C16orf82_chr16_27061927_27074166	0/0	c0006	465	2	2	0	0	0	0	copy fasta	C16orf82	chr16	27061927	27074166
C16orf82_chr16_27061927_27074166	0/0	c0007	465	2	2	0	0	0	0	copy fasta	C16orf82	chr16	27061927	27074166
C16orf86_chr16_67661814_67673755	1/1	c0001	954	269	84	63	73	11	36	copy fasta	C16orf86	chr16	67661814	67673755
C16orf86_chr16_67661814_67673755	0/0	c0002	954	2	2	0	0	0	0	copy fasta	C16orf86	chr16	67661814	67673755
C16orf86_chr16_67661814_67673755	0/0	c0003	954	2	0	0	2	0	0	copy fasta	C16orf86	chr16	67661814	67673755