JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C16orf86_chr16_67661814_67673755	0/0	c0004	954	1	0	0	1	0	0	copy fasta	C16orf86	chr16	67661814	67673755
C16orf86_chr16_67661814_67673755	0/0	c0005	954	1	0	1	0	0	0	copy fasta	C16orf86	chr16	67661814	67673755
C16orf86_chr16_67661814_67673755	0/0	c0006	954	1	0	0	0	1	0	copy fasta	C16orf86	chr16	67661814	67673755
C16orf87_chr16_46791603_46836180	1/1	c0001	465	264	84	60	76	10	32	copy fasta	C16orf87	chr16	46791603	46836180
C16orf89_chr16_5039122_5070956	1/1	c0001	1086	180	52	29	66	7	24	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	c0002	1086	124	33	11	65	5	10	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	c0003	1086	104	3	35	49	6	11	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	c0004	817	8	0	1	7	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	c0005	1086	3	3	0	0	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	c0006	1086	3	3	0	0	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	c0007	817	2	0	0	2	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	c0008	1086	1	0	0	1	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	c0009	1086	1	0	0	0	0	1	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	c0010	1086	1	0	1	0	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	c0011	1086	1	0	0	1	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	c0012	1086	1	0	1	0	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	c0013	1086	1	1	0	0	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	c0014	1086	1	1	0	0	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	c0015	1086	1	0	0	1	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf90_chr16_3488484_3500489	1/1	c0001	549	420	88	74	198	14	44	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	c0002	549	14	4	1	9	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	c0003	549	4	4	0	0	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	c0004	549	3	0	0	3	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	c0005	549	1	0	0	0	0	1	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	c0006	549	1	0	0	0	0	1	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	c0007	549	1	0	1	0	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	c0008	549	1	0	0	1	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	c0009	549	1	0	0	1	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf92_chr16_30018198_30029704	1/1	c0001	333	352	82	72	146	14	36	copy fasta	C16orf92	chr16	30018198	30029704
C16orf95_chr16_87297814_87322392	0/0	c0001	720	195	24	32	110	7	22	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	1/1	c0002	720	157	61	35	46	9	4	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0003	720	79	6	10	44	2	17	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0004	720	9	2	1	5	0	1	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0005	720	2	0	2	0	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0006	720	2	0	2	0	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0007	720	2	2	0	0	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0008	720	1	1	0	0	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0009	720	1	0	0	0	0	1	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0010	720	1	1	0	0	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0011	720	1	0	1	0	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0012	720	1	0	0	1	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0013	720	1	0	1	0	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0014	720	1	1	0	0	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0015	720	1	0	0	1	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0016	720	1	0	0	1	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0017	720	1	0	0	1	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0018	720	1	0	0	1	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	c0019	720	1	0	0	0	0	1	copy fasta	C16orf95	chr16	87297814	87322392
C16orf96_chr16_4551340_4605758	1/0	c0001	3426	139	30	40	47	9	12	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0002	3426	35	5	2	22	2	4	copy fasta	C16orf96	chr16	4551340	4605758