JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C16orf96_chr16_4551340_4605758	0/0	c0003	3426	25	0	8	13	0	4	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/1	c0004	3423	13	10	0	1	1	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0005	3423	6	6	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0006	3426	5	5	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0007	3426	4	4	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0008	3426	4	4	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0009	3426	4	4	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0010	3426	3	3	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0011	3426	3	3	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0012	3426	2	2	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0013	3426	2	2	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0014	3426	2	0	0	0	0	2	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0015	3426	2	1	0	0	1	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0016	3426	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0017	3426	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0018	3426	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0019	3366	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0020	3426	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0021	3366	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0022	3426	1	0	0	1	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0023	3426	1	0	0	0	0	1	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0024	3426	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0025	3363	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0026	3363	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0027	3426	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0028	3426	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0029	3423	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0030	3423	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0031	3426	1	0	0	1	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0032	3423	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0033	3426	1	0	0	0	1	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0034	3426	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0035	3426	1	0	0	0	0	1	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0036	3426	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0037	3426	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0038	3426	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0039	3426	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0040	3409	1	0	0	1	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0041	3423	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0042	3415	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0043	3426	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	c0044	3423	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C17orf100_chr17_6646762_6658476	1/1	c0001	357	433	92	77	204	16	42	copy fasta	C17orf100	chr17	6646762	6658476
C17orf100_chr17_6646762_6658476	0/0	c0002	357	1	0	1	0	0	0	copy fasta	C17orf100	chr17	6646762	6658476
C17orf107_chr17_4894536_4907934	1/1	c0001	573	330	61	52	165	11	39	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	c0002	573	89	29	22	30	3	5	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	c0003	566	14	0	0	14	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	c0004	573	5	5	0	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	c0005	573	2	0	2	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	c0006	573	1	0	0	1	0	0	copy fasta	C17orf107	chr17	4894536	4907934