JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C17orf67_chr17_56786913_56838920	0/0	c0003	273	1	1	0	0	0	0	copy fasta	C17orf67	chr17	56786913	56838920
C17orf75_chr17_32323441_32347173	1/1	c0001	1191	358	89	70	142	12	43	copy fasta	C17orf75	chr17	32323441	32347173
C17orf75_chr17_32323441_32347173	0/0	c0002	1191	5	0	0	5	0	0	copy fasta	C17orf75	chr17	32323441	32347173
C17orf75_chr17_32323441_32347173	0/0	c0003	1191	1	1	0	0	0	0	copy fasta	C17orf75	chr17	32323441	32347173
C17orf75_chr17_32323441_32347173	0/0	c0004	1191	1	0	0	0	0	1	copy fasta	C17orf75	chr17	32323441	32347173
C17orf75_chr17_32323441_32347173	0/0	c0005	1191	1	0	0	1	0	0	copy fasta	C17orf75	chr17	32323441	32347173
C17orf78_chr17_37370985_37397708	0/1	c0001	828	245	66	60	72	14	32	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	c0002	828	178	27	21	112	2	16	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	c0003	828	13	0	0	13	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	c0004	828	2	0	0	2	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	c0005	828	1	0	1	0	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	c0006	828	1	1	0	0	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	c0007	828	1	0	0	1	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf80_chr17_73227433_73253959	0/0	c0001	1830	172	31	30	87	6	18	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/1	c0002	1830	91	37	5	34	0	14	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0003	1830	72	5	27	30	3	7	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0004	1830	13	11	2	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0005	1830	8	0	0	7	0	1	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0006	1830	5	0	2	0	0	3	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0007	1830	4	4	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0008	1830	3	0	2	0	0	1	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	1/0	c0009	1830	3	2	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0010	1830	2	2	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0011	1830	2	0	2	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0012	1830	2	0	0	2	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0013	1830	1	0	0	1	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0014	1830	1	0	0	0	1	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0015	1830	1	0	0	1	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0016	1830	1	1	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0017	1830	1	0	0	1	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0018	1830	1	1	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	c0019	1859	1	0	0	1	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf98_chr17_38830086_38846438	0/1	c0001	465	379	81	70	178	12	37	copy fasta	C17orf98	chr17	38830086	38846438
C17orf98_chr17_38830086_38846438	0/0	c0002	465	45	13	9	17	1	5	copy fasta	C17orf98	chr17	38830086	38846438
C17orf98_chr17_38830086_38846438	0/0	c0003	465	4	0	1	0	3	0	copy fasta	C17orf98	chr17	38830086	38846438
C17orf98_chr17_38830086_38846438	0/0	c0004	465	2	0	0	2	0	0	copy fasta	C17orf98	chr17	38830086	38846438
C17orf98_chr17_38830086_38846438	0/0	c0005	465	1	0	0	1	0	0	copy fasta	C17orf98	chr17	38830086	38846438
C17orf99_chr17_78141385_78171297	0/1	c0001	798	219	77	62	45	5	29	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	1/0	c0002	798	94	5	13	59	7	9	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	c0003	798	81	1	7	67	0	6	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	c0004	798	31	5	2	22	0	2	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	c0005	798	11	11	0	0	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	c0006	798	4	0	0	0	2	2	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	c0007	798	1	0	0	1	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	c0008	798	1	1	0	0	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	c0009	798	1	0	0	1	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	c0010	798	1	0	1	0	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	c0011	798	1	0	0	1	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	c0012	798	1	0	1	0	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C18orf21_chr18_35967679_35984278	1/1	c0001	663	277	67	63	117	7	21	copy fasta	C18orf21	chr18	35967679	35984278