JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C19orf18_chr19_57953437_57979534	0/0	c0003	648	1	0	0	0	0	1	copy fasta	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	c0004	648	1	0	0	1	0	0	copy fasta	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	c0005	648	1	0	0	1	0	0	copy fasta	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	c0006	648	1	0	0	0	0	1	copy fasta	C19orf18	chr19	57953437	57979534
C19orf25_chr19_1468201_1484215	1/1	c0001	357	397	92	82	158	13	50	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	c0002	357	3	2	0	0	1	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	c0003	357	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	c0004	357	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf33_chr19_38299251_38310006	1/1	c0001	321	239	68	42	95	14	18	copy fasta	C19orf33	chr19	38299251	38310006
C19orf33_chr19_38299251_38310006	0/0	c0002	336	80	5	9	62	1	3	copy fasta	C19orf33	chr19	38299251	38310006
C19orf33_chr19_38299251_38310006	0/0	c0003	318	73	4	22	31	1	15	copy fasta	C19orf33	chr19	38299251	38310006
C19orf33_chr19_38299251_38310006	0/0	c0004	318	6	2	3	0	0	1	copy fasta	C19orf33	chr19	38299251	38310006
C19orf33_chr19_38299251_38310006	0/0	c0005	315	4	4	0	0	0	0	copy fasta	C19orf33	chr19	38299251	38310006
C19orf33_chr19_38299251_38310006	0/0	c0006	321	2	2	0	0	0	0	copy fasta	C19orf33	chr19	38299251	38310006
C19orf33_chr19_38299251_38310006	0/0	c0007	321	1	0	0	0	0	1	copy fasta	C19orf33	chr19	38299251	38310006
C19orf33_chr19_38299251_38310006	0/0	c0008	321	1	1	0	0	0	0	copy fasta	C19orf33	chr19	38299251	38310006
C19orf38_chr19_10843415_10874790	1/1	c0001	693	352	79	56	167	7	41	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	c0002	693	12	0	11	0	0	1	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	c0003	693	11	0	3	8	0	0	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	c0004	693	4	0	3	0	1	0	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	c0005	693	1	1	0	0	0	0	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	c0006	693	1	1	0	0	0	0	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	c0007	693	1	0	1	0	0	0	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	c0008	693	1	0	0	1	0	0	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	c0009	693	1	1	0	0	0	0	copy fasta	C19orf38	chr19	10843415	10874790
C19orf44_chr19_16491394_16526352	1/1	c0001	1974	191	32	40	88	8	21	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	c0002	1974	126	52	31	24	4	15	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	c0003	1974	4	4	0	0	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	c0004	1974	3	0	2	1	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	c0005	1974	2	0	0	2	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	c0006	1974	1	1	0	0	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	c0007	1974	1	1	0	0	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	c0008	1974	1	0	0	1	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	c0009	1974	1	0	1	0	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf47_chr19_40314536_40353397	1/1	c0001	1158	372	93	66	165	16	30	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	c0002	1158	2	0	0	0	0	2	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	c0003	1158	1	1	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	c0004	1158	1	1	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	c0005	1158	1	0	0	1	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	c0006	1158	1	0	1	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	c0007	1158	1	0	1	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	c0008	1158	1	1	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	c0009	1158	1	1	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	c0010	1158	1	1	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	c0011	1158	1	0	0	0	0	1	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	c0012	1158	1	0	0	0	0	1	copy fasta	C19orf47	chr19	40314536	40353397
C19orf53_chr19_13769456_13783773	1/1	c0001	300	262	64	50	106	14	26	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	c0002	300	166	28	30	89	2	17	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	c0003	300	3	3	0	0	0	0	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	c0004	300	1	0	0	1	0	0	copy fasta	C19orf53	chr19	13769456	13783773