JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C19orf53_chr19_13769456_13783773	0/0	c0005	300	1	1	0	0	0	0	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	c0006	300	1	0	0	0	0	1	copy fasta	C19orf53	chr19	13769456	13783773
C19orf67_chr19_14076624_14090783	1/1	c0001	1077	381	84	73	160	12	50	copy fasta	C19orf67	chr19	14076624	14090783
C19orf67_chr19_14076624_14090783	0/0	c0002	1077	7	7	0	0	0	0	copy fasta	C19orf67	chr19	14076624	14090783
C19orf67_chr19_14076624_14090783	0/0	c0003	1077	3	3	0	0	0	0	copy fasta	C19orf67	chr19	14076624	14090783
C19orf67_chr19_14076624_14090783	0/0	c0004	1077	3	2	1	0	0	0	copy fasta	C19orf67	chr19	14076624	14090783
C19orf73_chr19_49113402_49124143	0/1	c0001	390	243	70	46	81	15	30	copy fasta	C19orf73	chr19	49113402	49124143
C19orf73_chr19_49113402_49124143	1/0	c0002	390	124	18	22	66	1	16	copy fasta	C19orf73	chr19	49113402	49124143
C19orf73_chr19_49113402_49124143	0/0	c0003	390	2	1	1	0	0	0	copy fasta	C19orf73	chr19	49113402	49124143
C19orf73_chr19_49113402_49124143	0/0	c0004	390	2	0	2	0	0	0	copy fasta	C19orf73	chr19	49113402	49124143
C19orf73_chr19_49113402_49124143	0/0	c0005	390	1	0	0	1	0	0	copy fasta	C19orf73	chr19	49113402	49124143
C19orf73_chr19_49113402_49124143	0/0	c0006	390	1	1	0	0	0	0	copy fasta	C19orf73	chr19	49113402	49124143
C19orf73_chr19_49113402_49124143	0/0	c0007	390	1	0	1	0	0	0	copy fasta	C19orf73	chr19	49113402	49124143
C19orf81_chr19_50644445_50664306	0/1	c0001	597	343	87	70	130	15	40	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	1/0	c0002	597	66	12	11	35	2	5	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	0/0	c0003	597	2	0	0	2	0	0	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	0/0	c0004	597	1	0	0	0	1	0	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	0/0	c0005	597	1	0	1	0	0	0	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	0/0	c0006	597	1	0	0	0	0	1	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	0/0	c0007	597	1	1	0	0	0	0	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	0/0	c0008	597	1	0	0	1	0	0	copy fasta	C19orf81	chr19	50644445	50664306
C19orf84_chr19_51383289_51395591	1/1	c0001	561	291	50	67	120	14	38	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	c0002	561	144	48	21	63	4	8	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	c0003	561	7	0	0	7	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	c0004	561	1	1	0	0	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	c0005	561	1	0	0	1	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	c0006	561	1	0	0	1	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	c0007	561	1	1	0	0	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf85_chr19_55458001_55469751	1/0	c0001	669	372	76	67	167	16	45	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	c0002	669	11	10	1	0	0	0	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	c0003	669	9	1	4	0	2	2	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	c0004	669	3	3	0	0	0	0	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/1	c0005	669	2	0	0	1	0	0	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	c0006	669	2	2	0	0	0	0	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	c0007	669	1	1	0	0	0	0	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	c0008	669	1	0	0	0	0	1	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	c0009	669	1	1	0	0	0	0	copy fasta	C19orf85	chr19	55458001	55469751
C1D_chr2_68036130_68068004	1/1	c0001	426	241	46	69	82	15	27	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	c0002	426	119	37	9	55	1	17	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	c0003	426	6	6	0	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	c0004	426	1	1	0	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	c0005	426	1	0	0	1	0	0	copy fasta	C1D	chr2	68036130	68068004
C1GALT1C1L_chr2_43670151_43681429	1/0	c0001	948	186	19	28	125	0	13	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/1	c0002	948	162	48	42	30	11	30	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	c0003	948	13	13	0	0	0	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	c0004	948	13	2	3	5	0	3	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	c0005	948	6	2	3	0	1	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	c0006	948	4	4	0	0	0	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	c0007	948	2	0	0	2	0	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	c0008	948	2	0	0	0	0	2	copy fasta	C1GALT1C1L	chr2	43670151	43681429