JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C1GALT1C1L_chr2_43670151_43681429	0/0	c0009	948	2	2	0	0	0	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	c0010	948	2	0	0	2	0	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	c0011	948	1	1	0	0	0	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	c0012	948	1	0	0	0	0	1	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	c0013	948	1	1	0	0	0	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	c0014	948	1	0	0	0	0	1	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1_chrX_120620674_120635054	1/0	c0001	957	277	68	38	144	9	17	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	c0002	957	40	0	9	13	3	15	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	c0003	957	4	0	0	4	0	0	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/1	c0004	957	2	0	0	0	1	0	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	c0005	957	1	0	1	0	0	0	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1_chr7_7177544_7253616	1/1	c0001	1092	380	90	62	182	12	32	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	c0002	1092	4	4	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	c0003	1092	3	0	3	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	c0004	1092	2	2	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	c0005	1092	1	0	1	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	c0006	1092	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	c0007	1092	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1QA_chr1_22631628_22644678	0/0	c0001	738	281	70	57	124	5	25	copy fasta	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	1/1	c0002	738	146	26	23	74	11	10	copy fasta	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	c0003	738	1	0	1	0	0	0	copy fasta	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	c0004	738	1	0	0	1	0	0	copy fasta	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	c0005	738	1	0	0	1	0	0	copy fasta	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	c0006	738	1	0	0	0	0	1	copy fasta	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	c0007	738	1	0	1	0	0	0	copy fasta	C1QA	chr1	22631628	22644678
C1QBP_chr17_5427777_5444155	1/1	c0001	849	401	90	77	174	12	46	copy fasta	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	c0002	849	3	3	0	0	0	0	copy fasta	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	c0003	849	2	0	2	0	0	0	copy fasta	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	c0004	849	1	1	0	0	0	0	copy fasta	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	c0005	849	1	0	1	0	0	0	copy fasta	C1QBP	chr17	5427777	5444155
C1QB_chr1_22648236_22666637	1/1	c0001	756	418	90	73	197	14	42	copy fasta	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	c0002	756	4	0	0	4	0	0	copy fasta	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	c0003	756	3	3	0	0	0	0	copy fasta	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	c0004	756	3	1	2	0	0	0	copy fasta	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	c0005	756	1	0	0	1	0	0	copy fasta	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	c0006	756	1	0	1	0	0	0	copy fasta	C1QB	chr1	22648236	22666637
C1QC_chr1_22638633_22653108	1/0	c0001	738	319	62	67	144	14	31	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/1	c0002	738	115	36	15	50	2	11	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	c0003	738	9	0	0	9	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	c0004	738	4	0	0	4	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	c0005	738	1	0	0	1	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	c0006	738	1	1	0	0	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	c0007	738	1	1	0	0	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QL1_chr17_44954693_44973303	1/1	c0001	777	405	92	71	178	13	49	copy fasta	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	c0002	777	2	0	0	0	1	1	copy fasta	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	c0003	777	1	0	1	0	0	0	copy fasta	C1QL1	chr17	44954693	44973303
C1QL2_chr2_119151243_119163751	0/1	c0001	864	211	40	46	81	12	31	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	c0002	864	136	10	18	90	5	13	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	1/0	c0003	864	36	24	0	5	0	6	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	c0004	864	19	17	1	0	1	0	copy fasta	C1QL2	chr2	119151243	119163751