JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C1QL2_chr2_119151243_119163751	0/0	c0005	864	4	4	0	0	0	0	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	c0006	864	3	3	0	0	0	0	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	c0007	864	1	0	1	0	0	0	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	c0008	864	1	0	0	1	0	0	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	c0009	864	1	0	0	1	0	0	copy fasta	C1QL2	chr2	119151243	119163751
C1QL3_chr10_16508734_16526879	1/1	c0001	768	367	62	65	183	13	42	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	c0002	768	75	24	19	27	3	2	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	c0003	768	12	12	0	0	0	0	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	c0004	768	6	0	0	6	0	0	copy fasta	C1QL3	chr10	16508734	16526879
C1QL4_chr12_49327409_49342188	1/1	c0001	717	267	80	47	92	12	34	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	c0002	717	23	8	7	1	2	5	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	c0003	717	2	2	0	0	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	c0004	717	2	2	0	0	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	c0005	717	2	0	0	2	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	c0006	717	2	2	0	0	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	c0007	717	1	0	0	0	0	1	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	c0008	717	1	0	0	1	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QTNF12_chr1_1237453_1251722	1/1	c0001	909	238	47	45	101	11	32	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0002	909	50	8	7	28	4	3	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0003	909	5	4	1	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0004	909	3	2	1	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0005	909	3	3	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0006	909	3	3	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0007	909	3	0	0	3	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0008	909	2	1	1	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0009	909	2	2	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0010	909	2	2	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0011	909	2	1	1	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0012	909	2	2	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0013	909	2	1	0	1	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0014	909	2	0	0	2	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0015	909	1	0	0	0	0	1	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0016	909	1	0	0	0	0	1	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0017	909	1	1	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0018	909	1	1	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0019	909	1	0	0	1	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0020	909	1	1	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0021	909	1	0	0	0	1	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0022	899	1	0	0	0	0	1	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	c0023	909	1	1	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF1_chr17_79019169_79054788	1/1	c0001	846	175	39	26	82	6	20	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	c0002	846	132	17	20	81	1	13	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	c0003	846	25	16	3	0	2	4	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	c0004	846	20	7	1	11	0	1	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	c0005	846	12	8	3	1	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	c0006	846	9	7	2	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	c0007	846	4	1	3	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	c0008	846	4	2	2	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	c0009	846	2	0	0	2	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	c0010	846	2	0	0	0	1	1	copy fasta	C1QTNF1	chr17	79019169	79054788