JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C1QTNF1_chr17_79019169_79054788	0/0	c0011	846	2	0	0	2	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	c0012	846	1	0	0	0	0	1	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	c0013	846	1	0	0	0	0	1	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	c0014	846	1	0	0	0	0	1	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	c0015	846	1	1	0	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	c0016	846	1	0	0	1	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF2_chr5_160342754_160375626	1/0	c0001	858	300	73	51	143	7	25	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/1	c0002	858	149	23	29	70	9	17	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	c0003	858	1	0	0	0	0	1	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	c0004	858	1	0	0	1	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	c0005	858	1	0	0	0	0	1	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF3_chr5_34012858_34048213	1/1	c0001	960	410	97	66	193	10	42	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	c0002	960	2	0	0	0	2	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	c0003	960	1	0	0	1	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	c0004	960	1	1	0	0	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF4_chr11_47584667_47599411	1/1	c0001	990	390	85	68	181	13	41	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	c0002	990	11	0	7	0	3	1	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	c0003	990	2	2	0	0	0	0	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	c0004	990	2	0	2	0	0	0	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	c0005	964	1	0	0	1	0	0	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	c0006	990	1	1	0	0	0	0	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	c0007	990	1	0	1	0	0	0	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF5_chr11_119333942_119345883	1/1	c0001	732	384	89	76	165	14	38	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	c0002	732	2	0	0	0	0	2	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	c0003	732	1	1	0	0	0	0	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	c0004	610	1	0	0	1	0	0	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF6_chr22_37175166_37193247	1/0	c0001	837	124	16	6	82	4	15	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0002	837	85	9	7	55	1	13	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0003	837	49	8	13	14	3	11	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0004	837	45	2	7	35	1	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0005	837	38	11	19	1	3	4	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0006	837	33	25	5	2	0	1	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/1	c0007	837	26	2	17	0	5	1	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0008	837	22	16	1	5	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0009	837	7	1	2	0	0	4	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0010	837	6	3	3	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0011	837	2	2	0	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0012	837	2	2	0	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0013	837	1	0	0	0	0	1	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0014	837	1	0	0	0	1	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0015	837	1	0	1	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0016	837	1	1	0	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0017	837	1	0	0	1	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0018	837	1	0	0	1	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	c0019	837	1	0	1	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF7_chr4_15423033_15451167	1/1	c0001	870	436	93	74	209	18	40	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	c0002	870	3	3	0	0	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	c0003	870	2	2	0	0	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	c0004	870	1	0	0	1	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	c0005	870	1	0	0	1	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167