JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C1QTNF7_chr4_15423033_15451167	0/0	c0006	870	1	0	0	1	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF8_chr16_1083226_1101244	1/1	c0001	759	372	79	69	157	17	48	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	c0002	760	9	7	2	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	c0003	759	6	6	0	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	c0004	759	2	0	0	2	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	c0005	759	2	0	0	1	0	1	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	c0006	759	1	0	1	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	c0007	759	1	0	0	1	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	c0008	759	1	0	0	1	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	c0009	759	1	0	0	0	1	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	c0010	759	1	0	0	0	0	1	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF9B_chr13_23886099_23902502	0/0	c0001	1002	221	42	46	89	11	33	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0002	1002	119	3	24	83	3	6	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/1	c0003	1002	17	3	7	0	2	4	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0004	1002	15	14	1	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0005	1002	12	0	0	12	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0006	1002	10	9	1	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	1/0	c0007	1002	6	5	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0008	1002	4	4	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0009	1002	3	0	3	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0010	1002	2	0	0	0	0	2	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0011	1002	2	2	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0012	1002	2	2	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0013	1002	2	2	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0014	1002	1	1	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0015	1002	1	1	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0016	1002	1	0	0	0	0	1	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0017	1002	1	1	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0018	1002	1	1	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0019	1002	1	1	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0020	1002	1	1	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0021	1002	1	1	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	c0022	1002	1	1	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9_chr13_24304580_24327531	0/1	c0001	1002	261	38	50	127	12	33	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0002	1002	88	10	11	58	1	8	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0003	1002	41	12	6	19	2	2	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0004	1002	22	11	3	0	3	5	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0005	1002	10	0	1	9	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	1/0	c0006	1002	9	6	2	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0007	1002	8	8	0	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0008	1002	5	5	0	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0009	1002	5	0	0	5	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0010	1002	3	3	0	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0011	1002	2	2	0	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0012	1002	2	0	0	0	0	2	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0013	1002	2	2	0	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0014	1002	1	0	0	1	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0015	1002	1	0	0	1	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0016	1002	1	0	0	1	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0017	1002	1	1	0	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531