JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C1QTNF9_chr13_24304580_24327531	0/0	c0018	1002	1	0	0	1	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0019	1002	1	1	0	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0020	1002	1	0	1	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	c0021	1002	1	1	0	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1RL_chr12_7089554_7114214	1/1	c0001	1464	247	45	37	131	13	19	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0002	1464	115	35	25	38	1	16	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0003	1464	43	12	3	23	1	4	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0004	1464	8	1	6	0	0	1	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0005	1464	7	0	0	7	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0006	1464	6	0	2	0	0	4	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0007	1464	2	2	0	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0008	1464	1	0	0	1	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0009	1464	1	0	0	0	1	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0010	1464	1	0	0	0	0	1	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0011	1464	1	0	0	1	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0012	1464	1	0	0	0	0	1	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0013	1464	1	0	0	1	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0014	1464	1	1	0	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0015	1464	1	0	0	1	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0016	1464	1	0	1	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	c0017	1464	1	0	0	1	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1R_chr12_7075219_7097445	0/0	c0001	2118	126	42	45	19	4	16	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0002	2118	73	13	7	45	2	6	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0003	2118	52	6	5	34	4	3	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0004	2118	24	0	1	22	0	1	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0005	2118	9	1	1	4	0	3	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0006	2118	7	0	0	7	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0007	2118	6	0	5	1	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0008	2118	4	0	0	4	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0009	2118	3	1	0	1	0	1	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0010	2118	2	0	0	2	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0011	2118	1	0	1	0	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0012	2118	1	0	0	1	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0013	2118	1	0	0	1	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0014	2118	1	0	0	0	0	1	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0015	2118	1	0	0	1	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0016	2118	1	1	0	0	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0017	2118	1	1	0	0	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0018	2118	1	0	0	0	0	1	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0019	2118	1	0	0	1	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0020	2118	1	1	0	0	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0021	2118	1	0	0	1	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0022	2118	1	0	0	1	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0023	2118	1	0	0	1	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	c0024	2118	1	0	1	0	0	0	copy fasta	C1R	chr12	7075219	7097445
C1S_chr12_7055718_7076032	1/0	c0001	2067	275	65	54	111	11	33	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	c0002	2067	40	7	6	20	3	4	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/1	c0003	2067	16	5	6	1	0	3	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	c0004	2067	14	0	0	14	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	c0005	2067	5	0	0	5	0	0	copy fasta	C1S	chr12	7055718	7076032